Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1686g00001 ATGGATAAGGGGGTGCCACCTAGCCTATTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGTCAAATTAGAGAATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCGCCCAATCCCTCCATTACCAAAACATCTGTGGACTCGAAGGTTAATGATACTAGGGGTGGTTCTGGTGGCAAACTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTACCACTCCCTGTTAAATTGAGTGCCGATGAAGATGAAGAAGAAACAGAAGCTGGGTATATTTCAAATGATGCACCACTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAATGGAAGGCAATTTGAGGATGTTACGCGACAAAAAAATCCAGGGGATACACCTTTCAAATTTTTATTTGATGAAAGATGTGCTGAATACAAGTACTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCACAGACAAGGGAATCACAGGTGCCTCGTAATGGGGGAACAAGTACTTCATCTTCCAAACCCACTAGTGGTCATCAAAGATCATCTCAGCAGCATACATCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCGGACAATTCAAGAGCTTCTGGATCTTCAATTCAAACATCTCCACTAGGAATGAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAAGTATAAACAACCTAAGTATTCAAAAGATGAGATGCCCCCTCCTGCCTCTCTTCAAGGCAAAAAAGGCCATCACATGGGTGATTTCATACCTCCAGAAGAACTTGAGAAGTTCTTGGCCAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAAGGAGCATGTAGAGAGGTCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGATCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGTAATATTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCAGGGGAGGTGACTTCAGAGGATGACATATATGAGCAGTACAAGAAGCGGATGATGCTTGGTTATCGTTACAGACCCAATCCTCTGAACAATCCTCGAAAAGCTTATTACTGA 1299 0.4296 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLENSKPIKVISGSLSPNPSITKTSVDSKVNDTRGGSGGKLAFSLKQKSKLVPLPVKLSADEDEEETEAGYISNDAPLKRQKLGQDGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQTRESQVPRNGGTSTSSSKPTSGHQRSSQQHTSYQIPASALYESADNSRASGSSIQTSPLGMSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLQGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAKEHVERSKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNIKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1686g00001 432 MobiDBLite consensus disorder prediction 118 132 - -
Vium1686g00001 432 MobiDBLite consensus disorder prediction 287 316 - -
Vium1686g00001 432 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 54 IPR040169 -
Vium1686g00001 432 ProSiteProfiles G-patch domain profile. 349 396 IPR000467 GO:0003676
Vium1686g00001 432 MobiDBLite consensus disorder prediction 43 65 - -
Vium1686g00001 432 SMART surpneu2 141 195 IPR000061 GO:0003723|GO:0006396
Vium1686g00001 432 SUPERFAMILY Surp module (SWAP domain) 127 193 IPR035967 GO:0003723|GO:0006396
Vium1686g00001 432 ProSiteProfiles SURP motif repeat profile. 143 186 IPR000061 GO:0003723|GO:0006396
Vium1686g00001 432 MobiDBLite consensus disorder prediction 90 141 - -
Vium1686g00001 432 MobiDBLite consensus disorder prediction 43 74 - -
Vium1686g00001 432 Pfam Surp module 142 191 IPR000061 GO:0003723|GO:0006396
Vium1686g00001 432 Pfam G-patch domain 350 393 IPR000467 GO:0003676
Vium1686g00001 432 SMART G-patch_5 347 394 IPR000467 GO:0003676
Vium1686g00001 432 MobiDBLite consensus disorder prediction 197 271 - -
Vium1686g00001 432 Gene3D Surp module 114 198 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1686g00001 Vium-Chr1686 46980 52794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1686g00001 294 405 C2H2 Transcription Factor Family AT5G26610 35.043 3.43e-10 58.9