Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1682g00008 ATGTACAACATAATGGACAAAAAACCATGCAACTCAACATCATCTCATGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGATTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCTCTAGCCAAAGCTTCTGGTCTTAAACGAACTGGAAAAAGTTGTCGACTTCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAACATTACAACAGAAGAACAGCTTTTGATCTTTGAGCTTCATTCAAAGTGGGGTAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAACTTTTGGAGAACCAGAATCCAGAAGCACATGAAGCAAGCTGAGAATTCACAGCAACAGGGTAATAACAGTAACATTTCAGAGACAAATGATCATCATCATCATCACCATCAACATCATCATCATCATCATCAAGCAAGCTCTAGCACAAGCCTAGCATCCAACATGGCACTGCAAATTGAGTCTTACTCCACACCCTCATATCAAGAAACTTTGGAGCCATTTCCATCACAGTTTCCTCCAATCACTGATCAATCAAGTTCATGTACCAATCACAACATCAACAGCAACACCAACTATTGGAACATAGAGGATTTGTGGTCTATTCACTTGCTCAATGGGGATTGA 687 0.4017 MYNIMDKKPCNSTSSHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIFELHSKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHMKQAENSQQQGNNSNISETNDHHHHHHQHHHHHHQASSSTSLASNMALQIESYSTPSYQETLEPFPSQFPPITDQSSSCTNHNINSNTNYWNIEDLWSIHLLNGD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1682g00008 228 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vium1682g00008 228 SMART sant 74 122 IPR001005 -
Vium1682g00008 228 SMART sant 21 71 IPR001005 -
Vium1682g00008 228 CDD SANT 24 69 IPR001005 -
Vium1682g00008 228 Gene3D - 22 74 - -
Vium1682g00008 228 FunFam Myb-related protein 305 79 164 - -
Vium1682g00008 228 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vium1682g00008 228 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Vium1682g00008 228 MobiDBLite consensus disorder prediction 123 165 - -
Vium1682g00008 228 MobiDBLite consensus disorder prediction 1 19 - -
Vium1682g00008 228 MobiDBLite consensus disorder prediction 180 203 - -
Vium1682g00008 228 MobiDBLite consensus disorder prediction 1 21 - -
Vium1682g00008 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Vium1682g00008 228 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vium1682g00008 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vium1682g00008 228 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 192 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium1682g00008 228 MobiDBLite consensus disorder prediction 125 140 - -
Vium1682g00008 228 Gene3D - 78 164 - -
Vium1682g00008 228 CDD SANT 79 118 IPR001005 -
Vium1682g00008 228 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vium1682g00008 228 FunFam Myb transcription factor 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1682g00008 Vium-Chr1682 70412 73806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1682g00008 7 228 MYB Transcription Factor Family AT3G01530 56.306 1.91e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1682g00008 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1682g00008 K09422 - gmx:100305972 328.561