Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1682g00003 ATGGCGGCGCATCACGCGGAACCGACGAAGTTGCGGTGGGGCGAGCTGGAGGAGGATGACGGCGAGGATCTGGACTTCCTCCTCCCGCCGCGACAGGTCATAGGGCCAGATGAGAACGGCATCAAGAAAATAATTGAGTACAAGTTCGACGACGACGGAAACAAGGTCAAGATCACCACCACCACGCGCACACGTAAGCTCGCCAACGCGCGTCTCAGCAAACGTGCCGTCGAGCGTCGGTCCTGGCCCAAGTTCGGCGACGCCGTCCACGAAGACGTTGGCAGCCGCCTCACCATGGTCTCCACCGAAGAGATCCTTCTCGAACGCCCCAAGCCTCTTGGCTCGAAAACAGAGGAGCCGAAGACTGGTGGAGACCCCTTGGCTCAATTCCAGAAAGGTGCTGTTCTCATGGTGTGTAGGACATGTGGGAAGAAGGGCGATCACTGGACCTCAAGGTGTCCATACAAGGATCTTGCCCCACCATCTGAGGGATTCGTGGATAAGCCTGCAACATTAGATGCTGCAGCAGCAACAGGTGGTGCAACCAAGGGAGCCTACGTGCCTCCTGGTATGAGGGCAGGTGCTGAGAGGAGTGGTGGATCAGATATGCGGCGCAGGAACGATGAAAACTCTGTGAGGGTTACCAACCTCTCTGAAGACACAAGAGAGCCTGATTTGATGGAGCTGTTCCGTCCTTTTGGTCCCGTAAGCAGAGTTTATGTTGCCATTGATCAGAAGACCAGCATGAGCCGAGGTTTTGGCTTTGTTAACTTTGTCAACAGGGAAGATGCTCAACGGGCTATCACCAAACTCAATGGGTATGGATACGACAATCTCATACTCAGAGTTGAATGGGCAACTCCAAGGGCGAGCTAG 876 0.5502 MAAHHAEPTKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKIIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGSKTEEPKTGGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPATLDAAAATGGATKGAYVPPGMRAGAERSGGSDMRRRNDENSVRVTNLSEDTREPDLMELFRPFGPVSRVYVAIDQKTSMSRGFGFVNFVNREDAQRAITKLNGYGYDNLILRVEWATPRAS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1682g00003 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 278 IPR000504 GO:0003723
Vium1682g00003 291 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 10 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vium1682g00003 291 SMART rrm1_1 211 284 IPR000504 GO:0003723
Vium1682g00003 291 PIRSF Transl_init_eIF-3_RNA-bind 2 291 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vium1682g00003 291 Pfam Eukaryotic translation initiation factor 3 subunit G 32 158 IPR024675 -
Vium1682g00003 291 FunFam Eukaryotic translation initiation factor 3 subunit G 174 291 - -
Vium1682g00003 291 MobiDBLite consensus disorder prediction 180 211 - -
Vium1682g00003 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Vium1682g00003 291 SUPERFAMILY RNA-binding domain, RBD 196 289 IPR035979 GO:0003676
Vium1682g00003 291 Gene3D - 187 291 IPR012677 -
Vium1682g00003 291 CDD eIF3G 39 157 IPR024675 -
Vium1682g00003 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 20 287 - -
Vium1682g00003 291 CDD RRM_eIF3G_like 211 286 IPR034240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1682g00003 Vium-Chr1682 30014 31757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1682g00003 9 289 Eukaryotic Initiation Factors Gene Family AT3G11400 68.910 3.46e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1682g00003 K03248 - gmx:100818725 539.65