Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1681g00001 ATGGATTTCGTAGAAGGCGTTGGAGAGAGCTCCTCGCCGCCGCGTGCCTTCAGCGGTTTCGGAAACTACGACGTCCGCAACGACGTTTTCAACCGCCTTCTTGAAACAGGCCACGACCAAGCGGTTTCCAATCCCGAGTTTCGAGAACAGTTGGAGGCTCACTTCAATCGTTTGCCTCCGAGTTATGGACTTGATGTGAATATCGATAAAGCAGAAGATGTTTTGTTGCATCAAACGCTTCTTGCTCTGGCAAGGGATCCTGATAAGCGTCCTGTTTACCACATACGCTTCCTCGAGAATATTTCAACTAGAACAAACGGTGAAGATCAACAAATTTTAAGTACTCATTATAGGACGGGGTCATCTCATGCAATAAATGGGGTAGCTGTACCATCTGAGAAAAGTACGGTGAGGGAGATTGCAAATGAGTTTGAACCCTGCTCAAAGCTCGAGGACTTAAATTTGGATGTTAGAAAGAACTCCAAGGAGACACAGGAAATATTTCTCGCTGACAACTTTTTTCAGAGGCATGAACATTCAAGTATCCGAGTTCATGAAATAATATTTTCTACTGTTGACAAGCCAAAGCTGTTAAGCCAGCTGTCAGCTTTGCTGTCTGATATTGGACTTAACATCCGTGAAGCACATGTTTTCTCCACAACTGATGGCTATTCCCTTGATGTGTTTGTGGTGGATGGGTGGCCAGTAGAGGAAACAGATGAATTGTATGATGCTATGGAAAAAGCTGTTGCAAGAAGTGAGGGGTCATGGTCACGTCCTTCAAATTCTCATTCAGCCGTTGAGAAAGCCTTAGCAACAGAGGGAAAATTGGGAGATTGGGAAATAGACAGGAGGTTGCTGAAGTTAGGAGAAAAAATAGCGTCTGGATCCTCTGGAGATTTGTATCGAGGAGTTTATCTTGGGGAGGATGTTGCTGTTAAGGTTCTGAGAACTGAGCAATTGAATGATGCCTTAGAGGATGAGTTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTACAACATAAAAATGTTGTTCGTTTCATTGGTGCATGTACTAAGTGTCCGAATTTCTGCATAGTAACAGAGTATATGCCAGGAGGAAGTCTGTATGATTACATGCACAAAAATAATAATGTCTTGGAACTGTCTCAATTACTAAAGTTTGCAATTGATGTCTGCAAGGGCATGGAGTATTTGCACGCAAACAACATAATTCACAGAGATCTGAAGACGGCTAATTTGCTGATGGATACACACAATGTTGTTAAAGTTGCAGATTTTGGAGTCGCTCGGTTCCTAAATGAGGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCACCCGAGGTTATAAATCATCAGCCCTATGATCAGAAAGCAGATGTATTCAGTTTTTCCATTGTACTGTGGGAATTAGTGACCGCAAAGGTACCATATGACAACATGACTCCACTACAAGCTGCTTTGGGTGTGAGACAGGGTCTGCGGCCAGAGCTTCCGAACCATGGGCACCCTAAACTATTAGAGTTGATGCAGAGATGTTGGGAAGCCATTCCAATCGACCGTCCATCCTTTAATGAGATAACGGTTAAACTTGAAAATATTTTGCAAGAAATGGAGAAAGATTCAGAAGCAAATGGGGCTTGA 1656 0.4336 MDFVEGVGESSSPPRAFSGFGNYDVRNDVFNRLLETGHDQAVSNPEFREQLEAHFNRLPPSYGLDVNIDKAEDVLLHQTLLALARDPDKRPVYHIRFLENISTRTNGEDQQILSTHYRTGSSHAINGVAVPSEKSTVREIANEFEPCSKLEDLNLDVRKNSKETQEIFLADNFFQRHEHSSIRVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDELYDAMEKAVARSEGSWSRPSNSHSAVEKALATEGKLGDWEIDRRLLKLGEKIASGSSGDLYRGVYLGEDVAVKVLRTEQLNDALEDEFAQEVAILRQVQHKNVVRFIGACTKCPNFCIVTEYMPGGSLYDYMHKNNNVLELSQLLKFAIDVCKGMEYLHANNIIHRDLKTANLLMDTHNVVKVADFGVARFLNEGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDNMTPLQAALGVRQGLRPELPNHGHPKLLELMQRCWEAIPIDRPSFNEITVKLENILQEMEKDSEANGA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1681g00001 551 Gene3D Transferase(Phosphotransferase) domain 1 365 550 - -
Vium1681g00001 551 CDD STKc_MAP3K-like 293 535 - -
Vium1681g00001 551 ProSiteProfiles Protein kinase domain profile. 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1681g00001 551 PRINTS Tyrosine kinase catalytic domain signature 398 416 IPR001245 GO:0004672|GO:0006468
Vium1681g00001 551 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
Vium1681g00001 551 PRINTS Tyrosine kinase catalytic domain signature 361 374 IPR001245 GO:0004672|GO:0006468
Vium1681g00001 551 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672|GO:0006468
Vium1681g00001 551 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672|GO:0006468
Vium1681g00001 551 SMART serkin_6 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1681g00001 551 SUPERFAMILY Protein kinase-like (PK-like) 279 541 IPR011009 -
Vium1681g00001 551 Pfam Protein tyrosine and serine/threonine kinase 287 535 IPR001245 GO:0004672|GO:0006468
Vium1681g00001 551 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 206 543 - -
Vium1681g00001 551 Gene3D Phosphorylase Kinase; domain 1 276 364 - -
Vium1681g00001 551 ProSiteProfiles ACT domain profile. 186 260 IPR002912 -
Vium1681g00001 551 SUPERFAMILY ACT-like 185 253 IPR045865 -
Vium1681g00001 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Vium1681g00001 551 FunFam Serine/threonine-protein kinase isoform 1 278 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1681g00001 Vium-Chr1681 8455 25049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1681g00001 24 545 MAP Kinase Kinase Kinase AT4G35780 49.159 1.78e-174 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium1681g00001 PK_Tyr_Ser-Thr 7.3e-73 CL0016