Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1680g00003 ATGGCGTCGAACCGAAACGGCGTCCAAAGAGGAAGTGCCAAGTTCGATCGCCCTCTCAAGCCCCGCCCCCGCCCCTCCTCCCCCTCGCCGGGATCCGCCCTTCGCCGCGCCAACCCCGCCGCCAGAAATGCAGACGCCGTGCTTGGAAGAGTTCGGGTGGCTGTAAGATTGAGACCACGAAATGCTGAAGAAATGATGGCTGATGCTGATTTTGCTGACTGTGTTGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGTAGAAACAATTGGGATTCTGACACATATGAGTTTGATGAGGTGCTTACTGAATTTGCATCACAGAAACGTGTCTATGAAGTTGTGGCTAAGCCAGTTGTGGAGAGTGTTCTTGATGGTTATAATGGGACTGTGATGGCTTATGGTCAAACTGGAACTGGGAAAACTTTTACACTTGGACGACTTGGGGAAGTTGACACTTCTGATCGTGGTATCATGGTCCGTTCCATGGAGGATATTTTTGCTGACTTGTCACCCAATACTGATTCTGTAACAGTCTCGTATCTGCAGCTTTACATGGAGACTCTCCAGGACTTGCTTAATCCAGTAAATGATAATATTCCTATAGTGGAGGATCCAAGAAGTGGTGATGTATCTATGCCTGGGGCAACTCTTGTAGAAATCACAGACCAACATAGTTTTCTGGAGCTGTTAAGAGTAGGGGAAGCTAATAGAATTGCTGCTAACACAAAATTGAATACTGAATCTTCTCGCAGTCATGCTATTCTGATGGTTCATATTAAGAGGTCTGTCTTGGAAAGTGAAGATATTGTATCCAGTCAAAATGGCGATGCCTCTCATTTGACTAAACCTTCAAAACCACTTGTTCGGAAGAGCAAGTTGGTTGTGGTAGACTTGGCAGGTTCAGAACGTGTCCACAAGTCAGGAAGTGAAGGGCACATGCTAGAGGAAGCTAAATCTATCAATCTTTCACTTAGTTCATTGGGAAAATGTATTAATGCTCTAGCAGAGAACAATGCTCATGTTCCATTTCGTGATTCAAAGCTTACCAGAATGCTTCGAGACTCTTTTGGTGGCACAGCTAGGACTTCATTGATTGTGACTATTGGCCCATCACCACGTCATCGAGGAGAGACTTCTAGTACCATATTGTTTGGCCAGAGGGCTATGAAAGTTGAGAATATGTTGAAAATAAAGGAGGAATTTGATTATAAAAGCTTGTCTCGAAAGCTTGAGGTACAATTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCAGAAAGCTTTTGAGGATGAAGTTGAGAAAATAAATTTGGAGGCCCAATGTCGAATTGCCGAGGTGGAGAGGAACTTTGCAGATGCATTGGAGAAAGAGAGACTGAAATGCCAGATGGAGTACATGGAATTGGTAAAGGAGTTGGAGCAGAAGCTGGTCTTGAATCAAGAAAGACATGACTGCAATAGTTCTGTGGCTGGTAATGGAGAGGGGCCCGCATCATCTTCAGCAGGTGAAGTTACTGAGGTCAAAATACTGCTTGAAACTGAAAGAAGTCGGAGGAAGGCAGCTGAAGAAGAGGTAGAGCATCTAAAAAATCAACTGGGGAAATACACACAAACACAGGCAGGAGATGCCGAAATTGTAAAGCTGCGGAACATCTTGGAGGATGAGGCTAATCAGAAAAAAAGACTTGAAGAAGAAGTAATAATATTGAGAAGTCAATTATTGCAATTGAACTTTGAAGCTGACCAGATGAGAAAGTGTTTGGAAAATGGAAGCTCTGGGAGCACATTTTCTGCCATGGATTCCTCCCGGCCTACCCAATTCAAGGACACTGCAAATGGTCAGAAGTCATCTGTTGCTACTCTCTTTGAGCAAGTTGGACTGCAAAAGATTTTATCGTTGCTGGAGTCAGATGATGCCAATGTACGAATTCATGCTGTGAAAGTGGTAGCCAACCTAGCTGCAGAAGAGGCTAATCAAAAGAGAATTGTTGAGTCTGGGGGGCTTACTTCCTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCCAATCTTGCTATGAATGAAGCGAATCAAGAACTTATTATGGCTGAAGGAGGAATTACTCTGTTATCAATGACTGCATCTGATGCTGAAGATCCACAAACTCTTCGAATGGTTGCTGGGGCAATTGCTAACTTATGTGGAAATGATAGAATATTGATGACTCTGAGATCCCAGGGAGGTATTAAGGCTTTACTGGGAATCGTAAGATGTGGACATCCCGACGTCCTTTCCCAAGTTGCACGAGGAATTGCAAACTTCGCAAAATGCGAGTCTCGAGCTTCCAATCAAGGGATAAAAAGTGGCAGATCTTTTTTGATAGAAGATGGTGCACTTCCATGGATAGTACAAAATGCTAATAATGAAGCTGCACCAATCAGGCGTCACTTAGAGCTTGCACTCTGCCACTTGGCACAGCATGAAGTGAATGCAAAGGACCTGGTTAGTGGAGGTGCTCTTTGGGAGCTTGTTCGAATTTCACGAGATTGTTCACGAGAGGATATACGGAATCTTGCTCGTCGGACTCTTAGTTCTGTCTCAACATTCAAAGCTGAATTGCGGCGCCTACGTATAGATTATTAA 2655 0.4399 MASNRNGVQRGSAKFDRPLKPRPRPSSPSPGSALRRANPAARNADAVLGRVRVAVRLRPRNAEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGEVDTSDRGIMVRSMEDIFADLSPNTDSVTVSYLQLYMETLQDLLNPVNDNIPIVEDPRSGDVSMPGATLVEITDQHSFLELLRVGEANRIAANTKLNTESSRSHAILMVHIKRSVLESEDIVSSQNGDASHLTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQQKAFEDEVEKINLEAQCRIAEVERNFADALEKERLKCQMEYMELVKELEQKLVLNQERHDCNSSVAGNGEGPASSSAGEVTEVKILLETERSRRKAAEEEVEHLKNQLGKYTQTQAGDAEIVKLRNILEDEANQKKRLEEEVIILRSQLLQLNFEADQMRKCLENGSSGSTFSAMDSSRPTQFKDTANGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVESGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNDRILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSFLIEDGALPWIVQNANNEAAPIRRHLELALCHLAQHEVNAKDLVSGGALWELVRISRDCSREDIRNLARRTLSSVSTFKAELRRLRIDY 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1680g00003 884 CDD KISc 50 390 - -
Vium1680g00003 884 ProSitePatterns Kinesin motor domain signature. 292 303 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium1680g00003 884 Gene3D - 420 876 IPR011989 -
Vium1680g00003 884 PANTHER CENTROMERE PROTEIN E 50 616 IPR027640 GO:0003777|GO:0007018
Vium1680g00003 884 Pfam Armadillo/beta-catenin-like repeat 659 696 IPR000225 GO:0005515
Vium1680g00003 884 Pfam Kinesin motor domain 56 392 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1680g00003 884 Coils Coil 505 539 - -
Vium1680g00003 884 PRINTS Kinesin heavy chain signature 342 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1680g00003 884 PRINTS Kinesin heavy chain signature 126 147 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1680g00003 884 PRINTS Kinesin heavy chain signature 293 311 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1680g00003 884 FunFam Kinesin-like protein 42 422 - -
Vium1680g00003 884 MobiDBLite consensus disorder prediction 1 41 - -
Vium1680g00003 884 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 667 710 IPR000225 GO:0005515
Vium1680g00003 884 ProSiteProfiles Kinesin motor domain profile. 50 392 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1680g00003 884 Coils Coil 408 472 - -
Vium1680g00003 884 Gene3D Kinesin motor domain 42 419 IPR036961 -
Vium1680g00003 884 SMART kinesin_4 48 400 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1680g00003 884 FunFam Kinesin-like protein 596 872 - -
Vium1680g00003 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 427 IPR027417 -
Vium1680g00003 884 SMART arm_5 656 697 IPR000225 GO:0005515
Vium1680g00003 884 SMART arm_5 698 739 IPR000225 GO:0005515
Vium1680g00003 884 SMART arm_5 830 872 IPR000225 GO:0005515
Vium1680g00003 884 SMART arm_5 740 780 IPR000225 GO:0005515
Vium1680g00003 884 SMART arm_5 616 655 IPR000225 GO:0005515
Vium1680g00003 884 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 626 668 IPR000225 GO:0005515
Vium1680g00003 884 Coils Coil 546 580 - -
Vium1680g00003 884 SUPERFAMILY ARM repeat 617 874 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1680g00003 Vium-Chr1680 69261 94205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1680g00003 49 439 Calmodulin-binding Proteins AT5G65930 34.314 1.99e-46 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1680g00003 - K10396 pvu:PHAVU_008G075500g 1597.41