Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1677g00001 ATGTCTGTGAATCGAAAGCCTCCTGCTTCGAATGGTAGATTACCATCGAATATGAAATCTTGGAAGGTGAACGAGCCTCTGCATGGGTCTAATTCTCCCAGGACATGTAGGAGAAAACCCTTCCTTCTTTGGTTCTTTGGCTTTGTTGCCATAGGGAGTGTTTGGTTCATCTTGAGTTTCAATAGTAACTATTTGGCGAACAAGGAGAATGAAACAATTTGTGAGAAGAGAGCAAGAATCTTGCTACAACGGTACAATGTTAGTAGGGAACAGATTTATGCTTTGGCATCCTGGTTTCCTGGATCAGATCAGATTTTATTCAACTGTATTGATGAAAGAAGACTTCGGATGCTGTTAAGCAGCAGCGTGGTAAGCACTCCACAGTTAACGTGTCCAGAGAATCAGGAGCTAAGAAAGGAGCATATACGTGTAATGGACACTGTAGAACCTATCGAGCAATGTCCAATTCTCAATGATTATGTCCAGAACATTGTGCAACCGTGGGAAATGAGGGTATCTGCAATTTGGGGTCATGTGGGTTCATCTAATTTAACTAAAGGATTCTGGTGGGTCCTCATTGGAATTGTAATGTCCTACTTCTGTTTACTACGAAGGAGTCAAAAGCAGAAGCTGGCTCAGGGGCATCCAGCTGCACAACAAAAGCGGCTGAAGCATTTTCCACGGGGTCCATCAAGGGGTGCTGGGAGGTGGAGGAAAAAATTACTAGTTATATTTGTGTCACTTGGAATAATTGGGTCCTTTTGGTTATTTTGGCACCTAAATATGGACATCATGCAGAGAAGAGAAGAAATGCTAACAAACATGTGTGATGAGAGAGCCCGAATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACGTTTCACCATGGTAAACATCCTTCTGCAATTGATCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTTCATTCTGATAGGATGCATTTTGAGAAGCAGCATGGGTGGACAATTAAAAAAATGGAAACAGAGAATGAGGCATTAGTCCAAGATTGTATTCCTGGAAATTTGGATCCAGCACCCGTGCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACGGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGACAATATTTTGCGAGCAAGGGCATCTGGAAAAGGGGTTCTCACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCGGTCTATAACACTAATCTTCCTTTAGATGCTACACCAGAGCAGCGTATTGAAGCAACTGTGGGATATCTGGGTGCATGTTATGATGTTCCGTCATTGGTGGACAAGCTTCTGCATCAACTTGCCAGCAAGCAAACCATTGTTGTTAATGTTTATGACACAACTGATGCATCTGCACCTATCACAATGTATGGTACTGATGTTACTGACACTGGCCTACTACATGTAAGCAGCCTAGATTTCGGGGATCCACTACGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCACTACCTTGGACTGCAATCAATGCATCAGGGGGGGTGTTTGTTATTACTTTGCTGGTGGGTCATATTTTTTATGCTGCAATAAATAGAATAATAAAAGTTGAGGATGGCTATCGTGTAATGAGTGAGCTGAAAAGCCGTGCTGAGGCTGCAGATGTGGCAAAATCCCAGTTTCTTGCTACAGTTTCACATGAGATAAGGACTCCAATGAACGGTGTTTTAGGCATGCTGCAAATGTTGATGGACACTGAGCTTGATAAAAAACAGATGGATTATGCCCAAACTGCACATGATAGTGGTAAAGATCTCATATCAGTCATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCTGGAAAGCTTGAACTTGAAGCTGTAGCTTTTGACCCACGTGCTATTCTGGATGAAGTTTTATCTCCTTTCACTGAAAAATCTAAAGGAGTAGAGCTGGCAGTTTATGCATCCAATCAAGTACCTCAAGTTGTCATTGGTGATCCTAAACGATTCCGGCAAGTAATTACAAATCTTGTCAGCAATTCAGTCAAGTTCAATCATGATAAAGGACATGTGTTTGTTTCTCTTCATCTGGCAAATGAAGTGAAGAATCCACTTCATGTTATGGATGCAGTGCTGAGTGAAGGCTTAAACGTCAATCAAGATGTATCAAACAGAACATATGATACATTAAGCGGGTTTCCTGTATGCAACAAATGGAAAAGTTGGGCAAATTTTGAAAAGTTAAGTAGCGTAGATGATCCTGAAAATTTTCAATTATTAGTAATAGTTGAAGACACAGGTACGGGAATTCCTACAGATGCACAAAGCCGCATATTCACGCCTTTTATGCAGGCTGATAGTTCCCCCTCCCGAACTTATGGTGGAACTGGAATAGGACTGAGCATTAGTAAGTGCCTAGTTGATCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTTACTGGAACTTTCAGAAAAGGAGAAAGCACGTCTCTGGATGAAATGTGGCAGAATAATAGTTTTGGTTCAGAGTTCCAAGGATTGAGAGCATTAGTGGTAGATAGAAGAAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGATTGGGAATGTCTGTGGATATAACTAATAGTCTGAATTCTCAATGCTCTTGTCTATCTAGTACTTGCGACATGAGTATGTCAGGCCAGTTGGCCATGATTTTGATAGACAAGGATGCTTGGGATAAAGAATGTCTTATCTTATGCAAAATCAGGAAGCTTAGACAGAATGGCATCAAAAGGGATCCAATAGACTTACCGAAGATTTTTCTCCTGGACAACCACCCTAGAACCAACGAACATGATGAGCTAAAGTCAGTTGGTATCATAGATGATGTACTGATGAAGCCTCTTTGGCTTAGTTCTTTGGTTCACTCTTACAGAGAATCCCTTGGTGCTGAAAAAAATCAAGTACAAAGGAAAAAAGTATCCAAACTTGGGAGTTTATTAATGCACAAACAAATTTTGGTTGTTGATGATAATGCAGTGAATAGAAGAGTTGCAAAAGGTTTTCTGCAGAAGAATGGCGCAAAAGTTACTTCTGTGGAGAGTGGCATGGCTGCTCTAAAGGTGCTTAAACTGCCACATAGTTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCAACAAGGGAAATCCGCCGAATGGAGAGCGAGGTAAATGAGAAACTTGCGTGTGGACAAGCATCTGCAGAGATGTTTGGTAACATCTCATATTGGCACATTCCAGTACTAGCAATGACAGCAGATGCAACTCAAAGTTCAAATGAAGAGTGCAGAAATTGCGGAATGGATGACTATGTGACAAAGCCATTTGAAGAAGAGCAGCTCTATATGGCAATGACACGTTTCTTCCAGCCAGATTCATAG 3573 0.4123 MSVNRKPPASNGRLPSNMKSWKVNEPLHGSNSPRTCRRKPFLLWFFGFVAIGSVWFILSFNSNYLANKENETICEKRARILLQRYNVSREQIYALASWFPGSDQILFNCIDERRLRMLLSSSVVSTPQLTCPENQELRKEHIRVMDTVEPIEQCPILNDYVQNIVQPWEMRVSAIWGHVGSSNLTKGFWWVLIGIVMSYFCLLRRSQKQKLAQGHPAAQQKRLKHFPRGPSRGAGRWRKKLLVIFVSLGIIGSFWLFWHLNMDIMQRREEMLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPGNLDPAPVQDEYAPVIFAQETVSHIVSIDMMSGKEDRDNILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRIEATVGYLGACYDVPSLVDKLLHQLASKQTIVVNVYDTTDASAPITMYGTDVTDTGLLHVSSLDFGDPLRKHEMHCRFKQRPPLPWTAINASGGVFVITLLVGHIFYAAINRIIKVEDGYRVMSELKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDKKQMDYAQTAHDSGKDLISVINEVLDQAKIEAGKLELEAVAFDPRAILDEVLSPFTEKSKGVELAVYASNQVPQVVIGDPKRFRQVITNLVSNSVKFNHDKGHVFVSLHLANEVKNPLHVMDAVLSEGLNVNQDVSNRTYDTLSGFPVCNKWKSWANFEKLSSVDDPENFQLLVIVEDTGTGIPTDAQSRIFTPFMQADSSPSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESTSLDEMWQNNSFGSEFQGLRALVVDRRKIRAEVTRYHLQRLGMSVDITNSLNSQCSCLSSTCDMSMSGQLAMILIDKDAWDKECLILCKIRKLRQNGIKRDPIDLPKIFLLDNHPRTNEHDELKSVGIIDDVLMKPLWLSSLVHSYRESLGAEKNQVQRKKVSKLGSLLMHKQILVVDDNAVNRRVAKGFLQKNGAKVTSVESGMAALKVLKLPHSFDACFMDLQMPEMDGFEATREIRRMESEVNEKLACGQASAEMFGNISYWHIPVLAMTADATQSSNEECRNCGMDDYVTKPFEEEQLYMAMTRFFQPDS 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1677g00001 1190 SMART CHASE_2 309 508 IPR006189 -
Vium1677g00001 1190 Gene3D - 65 100 - -
Vium1677g00001 1190 Gene3D - 260 312 - -
Vium1677g00001 1190 ProSiteProfiles CHASE domain profile. 309 533 IPR006189 -
Vium1677g00001 1190 ProSiteProfiles Histidine kinase domain profile. 601 873 IPR005467 -
Vium1677g00001 1190 CDD HATPase_EvgS-ArcB-TorS-like 709 868 - -
Vium1677g00001 1190 SMART HisKA_10 594 659 IPR003661 GO:0000155|GO:0007165
Vium1677g00001 1190 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 648 868 IPR036890 -
Vium1677g00001 1190 Gene3D - 658 874 IPR036890 -
Vium1677g00001 1190 Pfam Response regulator receiver domain 1050 1181 IPR001789 GO:0000160
Vium1677g00001 1190 PRINTS Bacterial sensor protein C-terminal signature 798 812 IPR004358 GO:0016310|GO:0016772
Vium1677g00001 1190 PRINTS Bacterial sensor protein C-terminal signature 857 870 IPR004358 GO:0016310|GO:0016772
Vium1677g00001 1190 PRINTS Bacterial sensor protein C-terminal signature 833 851 IPR004358 GO:0016310|GO:0016772
Vium1677g00001 1190 PRINTS Bacterial sensor protein C-terminal signature 816 826 IPR004358 GO:0016310|GO:0016772
Vium1677g00001 1190 PANTHER TWO-COMPONENT HISTIDINE KINASE 243 1179 - -
Vium1677g00001 1190 Pfam His Kinase A (phospho-acceptor) domain 594 659 IPR003661 GO:0000155|GO:0007165
Vium1677g00001 1190 SMART REC_2 1048 1182 IPR001789 GO:0000160
Vium1677g00001 1190 MobiDBLite consensus disorder prediction 1 33 - -
Vium1677g00001 1190 FunFam Histidine kinase 4 313 540 - -
Vium1677g00001 1190 ProSiteProfiles Response regulatory domain profile. 1049 1186 IPR001789 GO:0000160
Vium1677g00001 1190 CDD HisKA 594 655 IPR003661 GO:0000155|GO:0007165
Vium1677g00001 1190 ProSiteProfiles Response regulatory domain profile. 896 1026 IPR001789 GO:0000160
Vium1677g00001 1190 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 704 868 IPR003594 -
Vium1677g00001 1190 Pfam CHASE domain 312 506 IPR006189 -
Vium1677g00001 1190 Gene3D CHASE domain 313 540 IPR042240 -
Vium1677g00001 1190 Gene3D - 569 657 - -
Vium1677g00001 1190 CDD REC_hyHK_CKI1_RcsC-like 1050 1182 - -
Vium1677g00001 1190 MobiDBLite consensus disorder prediction 1 31 - -
Vium1677g00001 1190 FunFam Histidine kinase 4 566 657 - -
Vium1677g00001 1190 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 580 660 IPR036097 GO:0000155|GO:0007165
Vium1677g00001 1190 SMART HKATPase_4 704 873 IPR003594 -
Vium1677g00001 1190 SUPERFAMILY CheY-like 1048 1186 IPR011006 -
Vium1677g00001 1190 Gene3D - 1043 1189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1677g00001 Vium-Chr1677 4435 14453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1677g00001 41 1188 Miscellaneous Gene Families AT5G35750 57.434 0.0 1297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1677g00001 CHASE 3.8e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1677g00001 K14489 - gmx:100805107 2039.23