Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1676g00006 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACCGAGCTGAGATTGGGTCTACCCGATGCTGACCATGTGAGTGTGGCTAACAATAACGGTGAAAAGAAGAATAAGAGGATGTTCTCGGAGATTGATGATGTTGGAGATGAAAACAGCTCCTCCGGCGGCCGTGGTGACCGGAAAATGGAGAACAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCCTACAGGAAGAAGAACAGTGTGAACGAAGCTTCGAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGTAAAATGGATCTGGGTATGCACAAAGGATACTCCGATTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATAGTGGAAGCATTGAAGAATGCGGAGAATGGTGAACACGTTCCCATTTACGAGGACAAAGATGGCGACTGGATGCTTGTTGGAGATGTCCCATGGGAAATGTTCATGGAGTCTTGCAAGAGGTTGAGGATTATGAAGAGAGCAGATGCAAAGGGGTTCGGTTTGCAACCAAAAGGATCCTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 585 0.4701 MAKEGLGLEITELRLGLPDADHVSVANNNGEKKNKRMFSEIDDVGDENSSSGGRGDRKMENKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGIVEALKNAENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1676g00006 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 174 IPR003311 GO:0005634|GO:0006355
Vium1676g00006 194 FunFam Auxin-responsive protein 80 181 - -
Vium1676g00006 194 Pfam AUX/IAA family 32 177 IPR033389 -
Vium1676g00006 194 Gene3D - 79 181 - -
Vium1676g00006 194 ProSiteProfiles PB1 domain profile. 85 173 IPR000270 GO:0005515
Vium1676g00006 194 SUPERFAMILY CAD & PB1 domains 78 170 - -
Vium1676g00006 194 MobiDBLite consensus disorder prediction 26 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1676g00006 Vium-Chr1676 44082 47347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1676g00006 39 192 B3 DNA Binding Superfamily AT4G23980 28.571 4.25e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium1676g00006 AUX_IAA 2.2e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1676g00006 K14484 - gmx:547784 333.954