Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1676g00004 ATGAAGAAGGAAAGCAGTGTTACACTGAAAACTGGGGAGCTATCTGGTCGAGTGACACGGGCTCGGGCTGCTGCTCATTGCTCATCAGGAAAGCTACCCCCTTTGAAAGAGAGATCACAGCAAAATCAGAAGCAGTTATCCAGAGTCAATTCAAAAAGAGCAGCTTCTGATAATACATGTGTTCCTCGTAAAAAAAGGACCGTTCTTCAGGATGTTACTAATGTTTGCTGTGAAAATGTGTACACGAGTTGTGTCAACTCAAATAAAATTCAGGCTAAGAAAAGAAAGCTGTCTAAGGCTGCTCAAGTTTATGTGTCCAAAGGGGTTCCTTCTGTTGCTGTAGACTCACTGCAATTTCAAGCTGACTCCAAAGCAAAAAGTTTACAGGAAACGGCTTTGAAATCAGAAGATACTATGTGCTCAATTAATTTGGAACACAGAGAACTTCTCCGGCCAAGTTCCAATGACTGTAACATGGATGTTCGATTGCCTGAAAGTCAGATGTCTGGAATATCTGGTCAACCTTTGATTTCTCAGAATAAAGACAAGAAAGGTAACCTTTCGAAAGTTTTAACTGCGTGGAAGGATCAAGACGTCACTAGCATAGACGATGATCTTGGAGATCCTCTATTGTGCAGCCTCTATGCTGCTGATATCTACGACACCATGCGTGTTGCTGAGCTTGCAAGAAGGCCTTATCCTAATTTTATGGAGATGGTGCAGCGAGATATCACTCAAAGCATGCGTGGAATACTGGTTGATTGGCTTGTAGAGGTTTCGGAGGAATACAAATTGGTTACAGACACTCTTTACCTCACTGTGTACCTCATAGATTGGTTCCTCTCCAAAAACTACATTGAAAGACAGAGACTTCAGCTACTTGGTATCACCTGCATGCTAATTGCCTCGAAGTACGAAGAAATTAATGCGCCACGTATTGAAGATTTCTGCTTCATTACAGACAATACATACACCAAAGCTGAGGTGCTGAAAATGGAGAGTCAAGTGTTGAAGTCGTCTGAATATCAACTGTTTGCTCCCACTATAAAAACATTTCTCAGGAGGTTTCTTCGGGCAGCACAAGCTTCATACAAGGATCCAAACCTTGAATTAGAGTACCTGGCCAATTACCTTGCTGAACTAACACTCATGGACTATGGTTTCTTGAATTTCCTTCCTTCTATCATTGCTGCATCAGCAGTGTTTCTTGCCTTGTGGACACTGGATCAGTCAAACCATCCATGGAATCCAACTCTTGAACACTATGCCAGTTACAAAGCATTAGATTTGAAAACCACAGTTCTTGCATTGCAAGACCTGCAGCTGAATACTGATGGTTGCCCTCTAACTGCCATTCGCACAAAATATAGACAAGACAAGTTCAAGTGTGTAGCAGCTCTGTCTTCACCAAAACTGCTTGAAACTTTGTTCTGA 1434 0.4205 MKKESSVTLKTGELSGRVTRARAAAHCSSGKLPPLKERSQQNQKQLSRVNSKRAASDNTCVPRKKRTVLQDVTNVCCENVYTSCVNSNKIQAKKRKLSKAAQVYVSKGVPSVAVDSLQFQADSKAKSLQETALKSEDTMCSINLEHRELLRPSSNDCNMDVRLPESQMSGISGQPLISQNKDKKGNLSKVLTAWKDQDVTSIDDDLGDPLLCSLYAADIYDTMRVAELARRPYPNFMEMVQRDITQSMRGILVDWLVEVSEEYKLVTDTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYTKAEVLKMESQVLKSSEYQLFAPTIKTFLRRFLRAAQASYKDPNLELEYLANYLAELTLMDYGFLNFLPSIIAASAVFLALWTLDQSNHPWNPTLEHYASYKALDLKTTVLALQDLQLNTDGCPLTAIRTKYRQDKFKCVAALSSPKLLETLF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1676g00004 477 SMART cyclin_7 254 338 IPR013763 -
Vium1676g00004 477 SMART cyclin_7 351 439 IPR013763 -
Vium1676g00004 477 Pfam Cyclin, N-terminal domain 218 343 IPR006671 -
Vium1676g00004 477 Gene3D - 232 345 - -
Vium1676g00004 477 CDD CYCLIN_AtCycA_like_rpt1 208 343 - -
Vium1676g00004 477 MobiDBLite consensus disorder prediction 1 59 - -
Vium1676g00004 477 FunFam Cyclin A1 334 466 - -
Vium1676g00004 477 Gene3D - 218 466 - -
Vium1676g00004 477 MobiDBLite consensus disorder prediction 34 57 - -
Vium1676g00004 477 SUPERFAMILY Cyclin-like 347 472 IPR036915 -
Vium1676g00004 477 PANTHER CYCLINS 156 458 IPR039361 -
Vium1676g00004 477 SMART Cyclin_C_2 347 470 IPR004367 -
Vium1676g00004 477 CDD CYCLIN_AtCycA-like_rpt2 347 461 - -
Vium1676g00004 477 Pfam Cyclin, C-terminal domain 347 469 IPR004367 -
Vium1676g00004 477 FunFam Mitotic cyclin 6 232 332 - -
Vium1676g00004 477 SUPERFAMILY Cyclin-like 207 343 IPR036915 -
Vium1676g00004 477 PIRSF Cyclin_A_B_D_E 23 476 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1676g00004 Vium-Chr1676 30959 41174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1676g00004 1 477 Core Cell Cycle Gene Families AT1G80370 55.943 3.59e-171 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1676g00004 K06627 - gmx:100789757 754.977