Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1676g00001 ATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGACGTTGCAGGACTTACTGAAGCAAAAAGACTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGGCCATGGAAAGGCGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAACGTATCTTCTGCAACTTTGGCTTCTAAATGGCGTGGTGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTTATCGATGAAATTGATTCTCTATGCAATGCAAGGGGGGCATCCGGGGAGCATGAATCGTCTAGAAGGGTGAAATCTGAACTTCTTGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCAACTAACTTCCCATGGGATATAGACGAGGCATTAAG 533 0.4503 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEAL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1676g00001 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 177 IPR027417 -
Vium1676g00001 177 Gene3D - 10 177 IPR027417 -
Vium1676g00001 177 SMART AAA_5 48 167 IPR003593 GO:0016887
Vium1676g00001 177 PANTHER AAA DOMAIN-CONTAINING 1 177 - -
Vium1676g00001 177 Pfam ATPase family associated with various cellular activities (AAA) 52 177 IPR003959 GO:0005524|GO:0016887
Vium1676g00001 177 FunFam Katanin p60 ATPase-containing subunit A1 10 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1676g00001 Vium-Chr1676 18 1239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1676g00001 4 177 Calmodulin-binding Proteins AT3G56690 49.432 5.62e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1676g00001 K07767 - vum:124827503 357.066