Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1671g00007 ATGAACAGCTTTGACCCCCAAAGACAAGACTTGTTGAAACAGAGATGGCAAGAGAGAAGACAGATCACGGGCGCAGCTTCAACTTCCTCTTCTTTGGCAGGCTTTCCTGGGCTTGAGGACGATGATCTTGTCTCCACCGTGGTTCCCGCTGTAACAGTTGTGCTAGAGGGTCGTTCCATCTGCCAGCGCATCAGCCTCCATAGCCATGGTAGCTACCAAAGTCTGGCCAAAGCCCTACGCGAAATGTTTGTGGAAAACGCTGAAGACAGTGATGATTTTGACCTTTCGAATGTCATTCCTGGCTACCTTATTGCCTATGAAGACATGGAGAACGATCTTCTTCTAGTCGGTGACCTTAGCTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGTATAATTCCAACCAAGACTAACTCAAGAAAAGGTTCAACAGGAGCATAA 444 0.473 MNSFDPQRQDLLKQRWQERRQITGAASTSSSLAGFPGLEDDDLVSTVVPAVTVVLEGRSICQRISLHSHGSYQSLAKALREMFVENAEDSDDFDLSNVIPGYLIAYEDMENDLLLVGDLSWKDFVRVAKRIRIIPTKTNSRKGSTGA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1671g00007 147 Gene3D - 45 145 - -
Vium1671g00007 147 Pfam AUX/IAA family 46 135 IPR033389 -
Vium1671g00007 147 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 50 138 IPR003311 GO:0005634|GO:0006355
Vium1671g00007 147 ProSiteProfiles PB1 domain profile. 48 138 IPR000270 GO:0005515
Vium1671g00007 147 SUPERFAMILY CAD & PB1 domains 53 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1671g00007 Vium-Chr1671 69344 70798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1671g00007 50 146 B3 DNA Binding Superfamily AT5G62000 30.928 8.92e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium1671g00007 AUX_IAA 2.3e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1671g00007 - - vra:106766495 235.728