Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1671g00006 ATGAACAGCTTTGACCCCCAAAGACAAGACTTGTTGAAACAGAGATGGCAAGAGAGAAGACAGATCACGGGCGCAGCTTCAACTTCCTCTTCTTTGGCTTTCTATGTCGGTAACACCAGCACCACCACCAATTCTGACAACAAATTCCAAGGCTTTCCTGGGCTTGAGGACGATGATCTTGTCTCCACCGTGGTTCCCGCTGTAACAGTTGTGCTAGAGGGTCGTTCCATCTGCCAGCGCATCAGCCTCCATAGCCATGGTAGCTACCAAAGTCTGGCCAAAGCCCTACGCGAAATGTTTGTGGAAAACGCTGAAGACAGTGATGATTTTGACCTTTCGAATGTCATTCCTGGCTACCTTATTGCCTATGAAGACATGGAGAACGATCTTCTTCTAGTCGGTGACCTTAGCTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGTATAATTCCAACCAAGACTAACTCAAGAAAAGGTTCAACAGGAGCATAA 495 0.4687 MNSFDPQRQDLLKQRWQERRQITGAASTSSSLAFYVGNTSTTTNSDNKFQGFPGLEDDDLVSTVVPAVTVVLEGRSICQRISLHSHGSYQSLAKALREMFVENAEDSDDFDLSNVIPGYLIAYEDMENDLLLVGDLSWKDFVRVAKRIRIIPTKTNSRKGSTGA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1671g00006 164 Gene3D - 62 162 - -
Vium1671g00006 164 ProSiteProfiles PB1 domain profile. 65 155 IPR000270 GO:0005515
Vium1671g00006 164 Pfam AUX/IAA family 62 152 IPR033389 -
Vium1671g00006 164 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 155 IPR003311 GO:0005634|GO:0006355
Vium1671g00006 164 SUPERFAMILY CAD & PB1 domains 70 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1671g00006 Vium-Chr1671 69332 70798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1671g00006 70 163 B3 DNA Binding Superfamily AT5G62000 31.915 1.02e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium1671g00006 AUX_IAA 2.5e-14 CL0072