Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1669g00005 ATGGCTCATTTGCTTTATGGTGATACTCCATCTTTTGGAGCTTCCCACCATGGACAGGCTCAGCAAACTATTCCGTTTCCAACCACTGGAACTTCCTTAAGGATTCTGCTCTTACATGGCAACTTGGAAATATGGGTCAACGAGGCCAAAAACCTTCCTAACATGGACATTCTTCACAAGAAAACGGGAGAAATGGTTTCCATGCTGTCCCGAAAACTTGGCGGCAAAGTCGAAGGCATCATGTCCAAAACAGGAACCAGTGATCCCTATGTTACGGTGTCTGTGGCGGGTGCTGTGATTGCCAGAACTTTTGTCCTCAGGAACATTGAGAACCCCGTTTGGACGCAGCGTTTCTACGTCCCCGTTGCACACCTTGCTTCTGAAGTCCACTTCGTTGTAAAGGACAGTGATATTGTTGGTTCTCAGATAATTGGAGTAGTGGGAATTCCGGTGGAACAGTTATGTAGTGGCACAAGAGTTGAGGGCTTTTTCCCTCTCCTTAGTACTAATGGAAAACCATGCAAGGGTGGAGCAAAGTTGAGTTTATCCATTCAGTACACCCCTGTTGAAAAGGTGCCTCTTTATAGCCATGGAGTAGGTGCTGGTCCTCATTACGAAGGGGTCCCTGACACATACTTTCCCCTTAGAAAAGGTGGAAAAGTTACACTTTATCAAGATGCTCATGTTCGTGAAGGGTGCCTTCCCAGTTTGAAAATGGATGGGGATGTGAATTATAAGCATGAAAGTTGTTGGCACGACATCTTTGATGCAATAAATCAGGCTCGTCGATTGGTTTATATTGTTGGGTGGTCCGTGTACTACAATGTTAGTCTCATTCGGGATAAGGGTGATGGAAAGGCTTACACTTTAGGTGACCTTCTCAAAGCTAAATCACAGGAAGGTGTCAGAGTGCTGCTCCTTGTATGGGATGATCCCACTTCTGGAAGCTTGCTTGGTCATAAAACGGTTGGACTTATGTACACTCATGATGAGGACACTCGCCAGTTTTTCAAGCATTCTTCGGTACAGGTGCTTCTTTGCCCACGAGCTGGTGGAAAGGGACACAGCTTTCTCAAAACGCAGGAAGCTGGAACAATCTATTCCCATCATCATAAGACAGTCATTGTAGACGCTGATGCAGGTCACAATAAAAGAAAGATAAAAGCTTTCATCTGAGGTCTTGATTTATGTGTGGGTCGATATGATACCCCAGACCATTCCCTCTTTAGAACTTTGCAGACAACACACAAAGATGACTACCATAATCCTAACTTTGAGGGGCCTGTCACTGATTGTCCTAGACAACCATGGCATGATTTGCATTCCCAAGTTGATGGGGCAGCAGCATACGACATCCTCACCAATTTCGAGGAGCGTTGGTTGAGGGCTTTGAAAATGCATAGATTACGAAAGATGAAAAGTTCGCATGATGATTCACTACTTAAAATTGACAGAATTGCTGACATTGTTGGCATTGATAATGTTCCTTGCCTAAATGAAGAAAACCAGGAGACTTGGCATACCCAGATCTTCCGATCAATTGATTCCAATTCTGTGAAAGGATTTCCAAAGGAATCACAAGATGCTATAAGAAGGAACTTGGTTTGTGGGAAGAATGTACTGATAGACATGAGCATACATTCTGCTTATGTCAAGGCAATTCGATCGGCCCAAAAGTTCATCTATATTGAGAACCAATACTTTCTTGGCTCATCGTATAACTGGGATTCTTACAAAGACCTCGGTGCAAACAACTTAATTCCAATGGAGATTGCATTAAAAATAGCCAGTAAAATCAAACAGCATGAGAGATTCTCCGTGTATATTGTCATTCCTATGTGGCCTGAAGGAGTACCTAAAAGTATAGCTACTCAAAGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACGGTTTACAAGGCCTTACAGGAGGCTGGGCTTGACAATCAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGTAATCGTGAGATCCCTGACAACCAAAATGTTTCAAATGTTACAAAAACTACCGGAGAAAACATACCACAGGCACTCACTAAAAAGAACAAAAGATTCATGATTTATGTTCATTCAAAAGGGATGATAGTGGATGATGAATATGTGTTACTGGGGTCTGCAAACATCAACCAGAGATCCATGGAAGGCACCAGAGATACAGAAATAGCAATGGGGGCATATGAGCCTAATCACACTTGGGCAAAGAAGCAATCTAGACCTCGTGGACAGGTGCATGGTTATAGAATGTCACTGTGGAGCGAACATATAGGAAGTGTGGAAGAATGTTTTGAGGAGCCAGAGAGGCTTGAGTGTGTGAGACGCATAAGGTCATTGAGTGAGAGTAACTGGAGACAGTATGCAGCAGATGAGGTAACTGAAATGAAAAGCCATTTTCTAAAATATCCGCTTGAAGTTGATTCAAAGGGTAATGTGAAGCCTCTTTCTGGCTGTGAGACATTTCCAGACGTTGGTGGGAACATAAGTGGCACTGTCACAGTATTCAGAGAAAATCTCACCATCTGA 2562 0.4305 MAHLLYGDTPSFGASHHGQAQQTIPFPTTGTSLRILLLHGNLEIWVNEAKNLPNMDILHKKTGEMVSMLSRKLGGKVEGIMSKTGTSDPYVTVSVAGAVIARTFVLRNIENPVWTQRFYVPVAHLASEVHFVVKDSDIVGSQIIGVVGIPVEQLCSGTRVEGFFPLLSTNGKPCKGGAKLSLSIQYTPVEKVPLYSHGVGAGPHYEGVPDTYFPLRKGGKVTLYQDAHVREGCLPSLKMDGDVNYKHESCWHDIFDAINQARRLVYIVGWSVYYNVSLIRDKGDGKAYTLGDLLKAKSQEGVRVLLLVWDDPTSGSLLGHKTVGLMYTHDEDTRQFFKHSSVQVLLCPRAGGKGHSFLKTQEAGTIYSHHHKTVIVDADAGHNKRKIKAFIXGLDLCVGRYDTPDHSLFRTLQTTHKDDYHNPNFEGPVTDCPRQPWHDLHSQVDGAAAYDILTNFEERWLRALKMHRLRKMKSSHDDSLLKIDRIADIVGIDNVPCLNEENQETWHTQIFRSIDSNSVKGFPKESQDAIRRNLVCGKNVLIDMSIHSAYVKAIRSAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIASKIKQHERFSVYIVIPMWPEGVPKSIATQRILFWQFKTMQMMYETVYKALQEAGLDNQYEPQDYLNFFCLGNREIPDNQNVSNVTKTTGENIPQALTKKNKRFMIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYEPNHTWAKKQSRPRGQVHGYRMSLWSEHIGSVEECFEEPERLECVRRIRSLSESNWRQYAADEVTEMKSHFLKYPLEVDSKGNVKPLSGCETFPDVGGNISGTVTVFRENLTI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1669g00005 853 SUPERFAMILY Phospholipase D/nuclease 526 782 - -
Vium1669g00005 853 Gene3D Endonuclease Chain A 508 752 - -
Vium1669g00005 853 Pfam C2 domain 40 166 IPR000008 -
Vium1669g00005 853 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Vium1669g00005 853 Pfam Phospholipase D C terminal 773 843 IPR024632 -
Vium1669g00005 853 PANTHER PHOSPHOLIPASE D 32 842 IPR015679 -
Vium1669g00005 853 Pfam PLD-like domain 551 735 IPR025202 -
Vium1669g00005 853 CDD C2_plant_PLD 36 187 - -
Vium1669g00005 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 699 726 IPR001736 GO:0003824
Vium1669g00005 853 SMART C2_3c 41 163 IPR000008 -
Vium1669g00005 853 FunFam Phospholipase D delta 241 479 - -
Vium1669g00005 853 FunFam Phospholipase D 513 745 - -
Vium1669g00005 853 Gene3D Endonuclease Chain A 236 484 - -
Vium1669g00005 853 ProSiteProfiles C2 domain profile. 16 164 IPR000008 -
Vium1669g00005 853 SUPERFAMILY Phospholipase D/nuclease 205 466 - -
Vium1669g00005 853 PIRSF PLD_plant 28 853 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium1669g00005 853 Gene3D C2 domain 35 186 IPR035892 -
Vium1669g00005 853 SMART pld_4 699 726 IPR001736 GO:0003824
Vium1669g00005 853 SMART pld_4 365 400 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1669g00005 Vium-Chr1669 51580 56054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1669g00005 32 853 Phospholipase D Gene Family (Wang group) AT2G42010 66.509 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1669g00005 K01115 - gmx:100786241 1571.99