Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1668g00007 ATGGCTTTGCGATCATGTTCCTCTTCCTTCATCTATGAGGTGTTTCTCAGTTTCAGAGGCGAAGACACACGTCACGGTTTCACTGGCAATCTCTACAAAGCCCTTGATGACAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAGAGCGGAGAGGAAATAACACCTGCTCTTTTGAATGCAATTGAAGAGTCCAGGATTGGCATCACTGTGCTCTCTAAAGACTATGCTTCCTCCTCGTTTTGCTTAGATGAACTTACAACCATCCTTGACTGCAGGACAAAAGGGCTGTTGGTCATACCAGTCTTTTATATGATGGACCCTTCAGATGTAAGACACCAGAAAGGTACTTATGGGGAAGCATTAGCTAAGCATCAGAAAAGATTCAAAGCTGAAAAGTTGCAGAAATGGAAGATGGCTCTCCAACAAGTGGCTGATCTCTCTGGTTATCATTTCAAACATGGAAATGAATATGAACACGAGTTTATTGGGAGGATTGTTGAGCGGGTCTCTAGGGAGATTAGCAGTGTTCATTTACCTGTGGATGATTACCTAGTGGGACTAGAGTCAAAAGTCCAAGAGGTAAAGAAGCTTTTGGATTTAGGATCTCATGATGGTGTTGTGATAGGGATCCATGGAATGGGTGGGATAGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTGATTGCTGCTAATTTTGATGAATCGTGTTTTCTTCAAAATGTGAGAGAAGAATCAAACAAATATGGGCTAAAACACCTCCAAAGCATCCTTCTTTCGAAAATCCTAAGACAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGCAGAGGCTGAGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGATTGAGCAATTAAAGACATTTGTTGGCAGATGTAATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACCAACATCTTCTGACATCTTATGACGTTAAAAGAACTTATGTTGTGAATAAATTGAACTATTATGATGCTCTTCAATTACTAACATGGAAAAATTTTAAGAGGGAAAAGGCTGATCCAAGTTATCAGGAAGTTTTGCATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCCTTGGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGATTCTGCTATTGAACATTACAAAAGAATTCCTAGTGATGAAATCCTAAAGATACTTAAAGTAAGTTTTGATACTTTGGGAAGAGAAGAGAAAAATGTTTTTCTTGACATTGCCTGTTGCTTGAAAGGATGTAAATTGACAGAGATTGAACATATGCTTCGTGCTCTTTATGATGACAGCATGAAACATCATATTAGTGTGTTGGTTGAAAAATCTCTCATAAAGATTAGTCAGAGTAGTACGGTCGAAATGCACGACTTGATTCATGCTATGGGTAGACAAATTGACCAACATGAATCACCTGAAGAGCCAGGAAAACACAAGAGGCTATGGTTACCAAAAGATATAATTCAAGTTTTAAAATACAACACGGGAACTGGTAAAATTGATATCATCTGTCTAGATATCTCCATATCTAAGAGAGAAGAAACGATACACTGGAATAGAAATGCCTTCAGAAAGATGAAAAACCTTAAAATACTTATCATAAGAAATGGTAAATTTTCTGAAGGTCCCAATTATTTTCCAGAAAGTTTGAAAGTACTGGAATGGCATCGATATCCTTCAAATTGTTTACCATCAAATTTTGATCCGAGAAAACTTGTGATATGCAAGTTACCTCACAGTCCTTTTACGTCATTTGGGTTTCATGGTTCATCAAAGAAGTTGGAGAATCTAACCGTCTTGAATTTTGACAAGTGCAATTATTTAACGCAGATACCTAACTTGTCTGATCTCTTAAATTTGGAAGTACTTTCATTTAAAAAGTGTGGGAGATTAATAGTAGTTCACGACTCAATTGGTTTTCTGAATAAACTTAAAATATTGAAATCTAAAGGTTGCAAGAAGCTTAGGAGATTTCCACCTCTCAACTTGACCTCTCTTGAACAACTTGAACTTTCATATTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGGAAACATAAGGAAACTTAGTTTGTTTGAACTTCCCATAAAAAACTTGCCTGTTTCATTTCATAATCTTACTGGACTACAAGAATTAGAGATGAGCTGTGATTTTGTTCAGTTAAGTAGCACTGTCTTGACGCCTGAACTGTCTGATTTTAGAGTTCATAAAGGCAAGGGGTGGCAATGGGTAAAATCACAAGAGGGTGAAGAAAAAGAGGGTTCAATGGTATCTCCAAAGATACATATGTTTTGGGTTTTATCTTGCAACTTGAATGATGATTTTTTTTCAGCAAGTTTCAAGCAGTTAGCTCAAGTGAGTCATTTGAGGCTAAGGGAAAGTAATGTCACATTCCTTCCTGAATGCATCAAAGAATTTCACAGCCTATTTTCTCTCGATGTGAATGATTGCAAGCATCTTCAGGAAATTAGAGGGGTTCCACCAAACTTGAAATATTTCAGGGCAATAAACTGTACATCCTTGACTTCCACGGGTTCAAGCATGCTGTTAAATCAGCAGCTTCACGAGGCTGGAGGGACTGATTTTATCTTTCCAGGAGGAAGTATTCCAGAGTGGTTCCATAAACAGAGGAAGGAACCTTCAATTTCTTTCTGGTTTCGAAATAAATTCCCTGCCAAAGTTCTTTGTCTTCTTATTGCACCTGTACTGGGTGATAACGTGACAGGATTGGTTAGATACATTATGTTCATCAATGGCAGAGTTAGAAAACAATATTTGTTACATTATCTGAACAGACAAGTGAAGATGTTGGAATCAGATTATACACATCTCTTTGATCTACAACACTCACATTTCTCCACTGATGATGATCTGATGGAAGAAGTGTCTTTAGAAAAGGAATGGAATCAGGTGACGATCACATATGAAGGTTTGATAGAGAGTTCCCTCATTAAAATAATCGGAATCCATGTTGTAAAAGAGGAAAACAGCAGCATGGAGGACATTCGATATGATGATCCTTATGCAAACACAAATGAAGACAATCACCTCAACACTTCCCAATCACAACCCTTCTGTGAAAGAGGTTTAATGTTGACATGCAAGTTTTTTATAGGTTCCTTTATGTTGTTCTCTTGCTTTGTATTATTAATTTTATCTAACCTCACAAACAACCCAACCTGA 3282 0.3763 MALRSCSSSFIYEVFLSFRGEDTRHGFTGNLYKALDDKGIHTFIDDEKLQSGEEITPALLNAIEESRIGITVLSKDYASSSFCLDELTTILDCRTKGLLVIPVFYMMDPSDVRHQKGTYGEALAKHQKRFKAEKLQKWKMALQQVADLSGYHFKHGNEYEHEFIGRIVERVSREISSVHLPVDDYLVGLESKVQEVKKLLDLGSHDGVVIGIHGMGGIGKTTLALAVYNLIAANFDESCFLQNVREESNKYGLKHLQSILLSKILRQKNIILTSWQEGASMIQQRLRRKKVLLILDDVDKIEQLKTFVGRCNWFGPGSRVIITTRDQHLLTSYDVKRTYVVNKLNYYDALQLLTWKNFKREKADPSYQEVLHRAVTYASGLPLALEVIGSNLVGKSVEEWDSAIEHYKRIPSDEILKILKVSFDTLGREEKNVFLDIACCLKGCKLTEIEHMLRALYDDSMKHHISVLVEKSLIKISQSSTVEMHDLIHAMGRQIDQHESPEEPGKHKRLWLPKDIIQVLKYNTGTGKIDIICLDISISKREETIHWNRNAFRKMKNLKILIIRNGKFSEGPNYFPESLKVLEWHRYPSNCLPSNFDPRKLVICKLPHSPFTSFGFHGSSKKLENLTVLNFDKCNYLTQIPNLSDLLNLEVLSFKKCGRLIVVHDSIGFLNKLKILKSKGCKKLRRFPPLNLTSLEQLELSYCSSLENFPEILGKMGNIRKLSLFELPIKNLPVSFHNLTGLQELEMSCDFVQLSSTVLTPELSDFRVHKGKGWQWVKSQEGEEKEGSMVSPKIHMFWVLSCNLNDDFFSASFKQLAQVSHLRLRESNVTFLPECIKEFHSLFSLDVNDCKHLQEIRGVPPNLKYFRAINCTSLTSTGSSMLLNQQLHEAGGTDFIFPGGSIPEWFHKQRKEPSISFWFRNKFPAKVLCLLIAPVLGDNVTGLVRYIMFINGRVRKQYLLHYLNRQVKMLESDYTHLFDLQHSHFSTDDDLMEEVSLEKEWNQVTITYEGLIESSLIKIIGIHVVKEENSSMEDIRYDDPYANTNEDNHLNTSQSQPFCERGLMLTCKFFIGSFMLFSCFVLLILSNLTNNPT 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1668g00007 1093 SMART AAA_5 206 344 IPR003593 GO:0016887
Vium1668g00007 1093 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
Vium1668g00007 1093 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Vium1668g00007 1093 Pfam TIR domain 12 174 IPR000157 GO:0007165
Vium1668g00007 1093 Gene3D Ribonuclease Inhibitor 534 690 IPR032675 -
Vium1668g00007 1093 Gene3D Ribonuclease Inhibitor 691 890 IPR032675 -
Vium1668g00007 1093 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 860 IPR044974 GO:0006952
Vium1668g00007 1093 Gene3D - 5 179 IPR035897 -
Vium1668g00007 1093 SUPERFAMILY L domain-like 544 880 - -
Vium1668g00007 1093 SMART till_3 11 148 IPR000157 GO:0007165
Vium1668g00007 1093 SUPERFAMILY "Winged helix" DNA-binding domain 413 521 IPR036390 -
Vium1668g00007 1093 PRINTS Disease resistance protein signature 209 224 - -
Vium1668g00007 1093 PRINTS Disease resistance protein signature 378 392 - -
Vium1668g00007 1093 PRINTS Disease resistance protein signature 285 299 - -
Vium1668g00007 1093 PRINTS Disease resistance protein signature 690 706 - -
Vium1668g00007 1093 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Vium1668g00007 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 437 IPR027417 -
Vium1668g00007 1093 Gene3D - 180 342 IPR027417 -
Vium1668g00007 1093 Pfam NB-ARC domain 190 409 IPR002182 GO:0043531
Vium1668g00007 1093 Gene3D - 343 427 IPR042197 -
Vium1668g00007 1093 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 151 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1668g00007 Vium-Chr1668 21272 25254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1668g00007 7 747 WRKY Transcription Factor Family AT4G12020 29.868 1.57e-79 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1668g00007 - - var:108344036 1383.24