Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1664g00033 ATGTCTCCATTTCAGTTATTGTTGGTAGTAGCAGTACTGCTTCTGTGGGTGTGGTCAGAGGCTACAGTTAATGCAAATGATGATGAGATAAAAAGGAGCAGCATAGAGAAGTGCTCAATGTTGAAGTCGAAGATTGTTGTGAACATTGGAGCAGCCGTAGAGTTGAGTTCTCGAGTGGGAAAGGAAGAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGACAGAGCTGCTATGAGCTTGCCTTGAACTACAGTTATAACGTTCATCGCAACCCATCATCTCCCACCATCTTCGCTGCCGATCTTGCAAACAACAAACAAGTGCAAGTTGTTGTAGGAACAAAACTCGATGCAGCAACATTATTCCTCTCCATCGACGAAAACTCAAAGGATGTTCCCATCATATCTCTAACCTCAACAGCTACTCCAGAAATAGCTTCAATCCCATTGCCACACTTCATCCAAATGGGCCATGAAGTCACCCTTCACATGCATTGCACTGCATCCATCATACACCAATTCCATTGGCGAAAGGTTACAGCAATTTACGAACACAACAATCTCTTTGCTTCTCATTCAGAGATACTGACAAGGCTCTCTTACTCTCTGCGCCTGGTCAATGCTGAAATCGATCACCATGTAGCTTTTGCTTCAATGACCCTTCTCTCAAACCCAACCGAGATCATAGAACACGAGCTTACAAGGCTCAAGAGCAAGAGCAATAGGGTGTTCTTGCTTATTCAATCCTCCTTGGAGTTTGCCACTTTGCTTTTTCAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTAGCCAATCACCTTGATTCCCTTGATTCTTCTGTCACTTTCAACATGCAAGGTGTCATGGGGTGCAAAACCAACTTCCTGGAAGTGAGTGAAAGGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCACTGGAATACCCTGAGGAAGAAAGATTGCATCCGAGTGTCTTTGCTCTCAGGGCTTATGATGCTGTTTGGACCATTGCTAAAGCCTTGGAGAGCTCACAGGGAAACTTTTCCTTATCAGAAAATATTTTGCATAGTGATCACGAGGGCCTTAGTGGGAAGATAAGGTTCAAAGGAAGAATGTTATTGGAATCACCAACCTTTAAGATTGTCAATGTTGTTGGAAAAGGTTATAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAGCCTTGTTGAGCATGAGGTGGTGAACACAACAACAACTAGTGCTGGTTCTGCTAGATTGCTTTTAAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTATAATAGTAGTGAGAGAAAGCCTTTGAAAATTGGGGTTCCCGCTGTCGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACCCAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTTGATGCTGCTGTGGGGGATATACAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATGTTGAATCTGGCATAGCCATGGTGGTGAAAGTAAAGCCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGCTGATGGCAGCAATGCATCTGTTCATAGCATTTGTAATCTGGTTCATTGAAGGTGAAAACAATTCGGAGCTGAAGAGTCTTGGGGCCATTCTCTGGTTTTCTGTCACAACATTGTTCTTCATACACAGAGAACCAGTAAATAGCAACTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTAATTGTGACACAAAGTTTTACTGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATACAAACACTGCTGAAGACAAATGCAATCATAGGGTGCAATAAGAACACTTTTTTGGTCCATTACTTAGTTGATGAACTCAAATTCCAGCCACAGAATATCAGGGTCTTTGACTCCATCCATGATTTCCCAAGAGCATTTGAGAACAAAGAAATTGTGGCTTCTTTCACCATTGCCCCTCATGCTGATGTCTTCCTAGCCACCTATTGCAAAGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTTCCAAAAGGTTCAAGTTTAGCAATTGACATATCTCCCGAGCAACCTTAA 2343 0.4251 MSPFQLLLVVAVLLLWVWSEATVNANDDEIKRSSIEKCSMLKSKIVVNIGAAVELSSRVGKEEKIAMEVAIEDVNRQSCYELALNYSYNVHRNPSSPTIFAADLANNKQVQVVVGTKLDAATLFLSIDENSKDVPIISLTSTATPEIASIPLPHFIQMGHEVTLHMHCTASIIHQFHWRKVTAIYEHNNLFASHSEILTRLSYSLRLVNAEIDHHVAFASMTLLSNPTEIIEHELTRLKSKSNRVFLLIQSSLEFATLLFQKAKQMGMMEKGSVWIIADDVANHLDSLDSSVTFNMQGVMGCKTNFLEVSERFKRFKFMFRRKFALEYPEEERLHPSVFALRAYDAVWTIAKALESSQGNFSLSENILHSDHEGLSGKIRFKGRMLLESPTFKIVNVVGKGYKELAYWSMESGLSESLVEHEVVNTTTTSAGSARLLLSSVDWPGGLKTVPKGWVYNSSERKPLKIGVPAVDPCPQFVNVSHDKRLNETQFTGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFIHREPVNSNLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIQTLLKTNAIIGCNKNTFLVHYLVDELKFQPQNIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISPEQP 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1664g00033 780 Gene3D - 461 573 - -
Vium1664g00033 780 Gene3D - 340 460 - -
Vium1664g00033 780 Gene3D - 40 162 - -
Vium1664g00033 780 CDD PBP1_GABAb_receptor_plant 48 418 IPR044440 -
Vium1664g00033 780 SUPERFAMILY Periplasmic binding protein-like I 46 454 IPR028082 -
Vium1664g00033 780 Pfam Bacterial extracellular solute-binding proteins, family 3 488 770 IPR001638 -
Vium1664g00033 780 Gene3D - 163 334 - -
Vium1664g00033 780 PIRSF IGluLR_plant 2 364 IPR017103 -
Vium1664g00033 780 PIRSF IGluLR_plant 356 778 IPR017103 -
Vium1664g00033 780 Pfam Ligand-gated ion channel 584 691 IPR001320 GO:0015276|GO:0016020
Vium1664g00033 780 FunFam Glutamate receptor 575 708 - -
Vium1664g00033 780 SUPERFAMILY Periplasmic binding protein-like II 440 772 - -
Vium1664g00033 780 Gene3D - 574 706 - -
Vium1664g00033 780 SMART GluR_14 465 780 IPR001320 GO:0015276|GO:0016020
Vium1664g00033 780 Pfam Receptor family ligand binding region 64 398 IPR001828 -
Vium1664g00033 780 FunFam Glutamate receptor 165 334 - -
Vium1664g00033 780 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 776 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1664g00033 Vium-Chr1664 238851 243305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1664g00033 104 776 Ion Channels AT5G11180 30.833 1.48e-107 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1664g00033 - - vra:106763764 1476.84