Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1664g00032 ATGTTGTCTACAACGAATTGTGGATCTACAAACAACAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTTGGCTTGTTTGGCATTTGTGGAAGCATTGCTGTCATAGGTTTATTGGCAACCATTGTTCACTTTGTTAAAAGGAAAGCACAAACATTTATGAATTACCTATTACTGTCACAGTTACAGAGAGGATTGCAGATAATCAAACTTTTTGCTCAAAAGCATCCATACAAGTACAGAAAGACCGCACCTGCCCAAGATGCAAATAGTAGAGAGAATGTATCTCAAAACAATGAGCTTGCTACACCAATTAAACTTNACTCTCTGCGCCTGGTCAATGCTGAAATCGATCACCATGTAGCTTTTGCTTCAATGACCCTTCTCTCAAACCCAACCGAGATCATAGAACACGAGCTTACAAGGCTCAAGAGCAAGAGCAATAGGGTGTTCTTGCTTATTCAATCCTCCTTGGAGTTTGCCACTTTGCTTTTTCAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTAGCCAACCACCTTGATTCCCTTGATTCTTCTGTCACTTTCAACATGCAAGGTGTCATGGGGTGCAAAACCAACTTCCTGGAAGTGAGTGAAAGGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCACTGGAATACCCTGAGGAAGAAAGATTGCATCCGAGTGTCTTTGCTCTCAGGGCTTATGATGCTGTTTGGACCATTGCTAAAGCCTTGGAGAGCTCACAGGGAAACTTTTCCTTATCAGAAAATATTTTGCATAGTGATCACGAGGGCCTTAGTGGGAAGATAAGGTTCAAAGGAAGAATGTTATTGGAATCACCAACCTTTAAGATTGTCAATGTTGTTGGAAAAGGTTATAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAGCCTTGTTGAGCATGAGGTGGTGAACACAACAACAACTAGTGCTGGTTCTGCTAGATTGCTTTTAAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTATAATAGTAGTGAGAGAAAGCCTTTGAAAATTGGGGTTCCCGCTGTCGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACCCAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTTGATGCTGCTGTGGGGGATATACAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATGTTGAATCTGGCATAGCCATGGTGGTGAAAGTAAAGCCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGCTGATGGCAGCAATGCATCTGTTCATAGCATTTGTAATCTGGTTCATTGAAGGTGAAAACAATTCGGAGCTGAAGAGTCTTGGGGCCATTCTCTGGTTTTCTGTCACAACATTGTTCTTCATACACAGAGAACCAGTAAATAGCAACTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTAATTGTGACACAAAGTTTTACTGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATACAAACACTGCTGAAGACAAATGCAATCATAGGGTGCAATAAGAACACTTTTTTGGTCCATTACTTAGTTGATGAACTCAAATTCCAGCCACAGAATATCAGGGTCTTTGACTCCATCCATGATTTCCCAAGAGCATTTGAGAACAAAGAAATTGTGGCTTCTTTCACCATTGCCCCTCATGCTGATGTCTTCCTAGCCACCTATTGCAAAGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTTCCAAAAGGTTCAAGTTTAGCAATTGACATATCTCCCGAGCAACCTTAA 2061 0.4139 MLSTTNCGSTNNKIQNEQLGPQPFFGLFGICGSIAVIGLLATIVHFVKRKAQTFMNYLLLSQLQRGLQIIKLFAQKHPYKYRKTAPAQDANSRENVSQNNELATPIKLXSLRLVNAEIDHHVAFASMTLLSNPTEIIEHELTRLKSKSNRVFLLIQSSLEFATLLFQKAKQMGMMEKGSVWIIADDVANHLDSLDSSVTFNMQGVMGCKTNFLEVSERFKRFKFMFRRKFALEYPEEERLHPSVFALRAYDAVWTIAKALESSQGNFSLSENILHSDHEGLSGKIRFKGRMLLESPTFKIVNVVGKGYKELAYWSMESGLSESLVEHEVVNTTTTSAGSARLLLSSVDWPGGLKTVPKGWVYNSSERKPLKIGVPAVDPCPQFVNVSHDKRLNETQFTGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFIHREPVNSNLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIQTLLKTNAIIGCNKNTFLVHYLVDELKFQPQNIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISPEQP 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1664g00032 686 Gene3D - 90 240 - -
Vium1664g00032 686 SMART GluR_14 371 686 IPR001320 GO:0015276|GO:0016020
Vium1664g00032 686 Gene3D - 393 464 - -
Vium1664g00032 686 FunFam Glutamate receptor 481 614 - -
Vium1664g00032 686 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 127 682 IPR015683 -
Vium1664g00032 686 Pfam Receptor family ligand binding region 131 304 IPR001828 -
Vium1664g00032 686 Gene3D - 480 612 - -
Vium1664g00032 686 SUPERFAMILY Periplasmic binding protein-like II 345 678 - -
Vium1664g00032 686 Pfam Bacterial extracellular solute-binding proteins, family 3 394 676 IPR001638 -
Vium1664g00032 686 Gene3D - 246 371 - -
Vium1664g00032 686 Pfam Ligand-gated ion channel 490 590 IPR001320 GO:0015276|GO:0016020
Vium1664g00032 686 SUPERFAMILY Periplasmic binding protein-like I 118 360 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1664g00032 Vium-Chr1664 235051 238809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1664g00032 113 682 Ion Channels AT5G11180 31.341 5.76e-94 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1664g00032 - - vra:106763764 1116.68