Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1664g00031 ATGGACGGTTACGACGGAACCGTGAGGCTCGGCGCCATTAACCTCAGGCACGATCGCGCTGATTTGGACTCCGGCCCCGACGTTTCCGTCTCCTCGCCGGTCACGCGGCAGAAAGCCGCCGCCGCCAAGCAGTTCATCGAGAATCATTACAAGAACTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGGGCGCTGCAGAGGAAAGTGCAAGAATCTCAGATACCGGTTGAGGAGAAGGAGGAAATGATGAGGAACTTGGAGCGCCGAGAAACTGAGTTCATGAGGATTCAGAGACGTAAAATTGGAATTGACGATTTCGAGCAATTGACGGTGATTGGGAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACGGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGTCGCGGACAGGTGGAACATGTTCGATCCGAGAGAAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTTTATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGACGTTGCTCGCTTCTACATCGCTGAAAGCATTCTTGCTATTAACTCGATACATCAACACAACTATGTACATAGGGATATTAAACCAGATAACCTGATACTGGACAAAAATGGTCATTTGAAGCTTTCGGACTTTGGCTTATGTAAGCCTCTTGACGATAAGTATTCAACAATTTTATTGGAAAATGAAGATCTTACCAGTCAAGAATCAACCAGTGAAACTGAAGGATATTCTGCTTCTCCTTGGTTGATGCCAAAGGAGCAATTACAGCAGTGGAAACGTAATCGACGTGCATTGGCGTACTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGATGATCCAAGGATGGCCTGCCGAAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCAGAAGAACCTAAGATATCAGTAGAAGCAAAGGATTTGATCTTTCGCTTACTATGTGATGTGGACTCAAGACTAGGAACAAGAGGAGTAGAAGAAATAAAGGCTCATCCATGGTTCAAGGGTGTTCAGTGGGACATGCTTTATGAATTAGAGGCTGCTTATAAACCTACAGTCACTGGGGATTTAGATACTCAAAACTTTGAGAAGTTTCCTGAAGTAGATGGCCCACCATCCGTAACAGCAACTGTTGGACCTTGGCGGAAGATGCTGACATCCAAAGATAACAATTTCATTGGATATACTTTTAAGAAGTCAGACATTCTTACATCTCTTGAAAGTTCAGGCATACCCGAAGAAGATACTCCTAAAATAAACACCTTGGGATGA 1494 0.4337 MDGYDGTVRLGAINLRHDRADLDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPVEEKEEMMRNLERRETEFMRIQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAINSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDLTSQESTSETEGYSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPEEPKISVEAKDLIFRLLCDVDSRLGTRGVEEIKAHPWFKGVQWDMLYELEAAYKPTVTGDLDTQNFEKFPEVDGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDILTSLESSGIPEEDTPKINTLG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1664g00031 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vium1664g00031 497 Gene3D Phosphorylase Kinase; domain 1 106 437 - -
Vium1664g00031 497 SUPERFAMILY Protein kinase-like (PK-like) 86 460 IPR011009 -
Vium1664g00031 497 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1664g00031 497 CDD MobB_NDR_LATS-like 42 103 - -
Vium1664g00031 497 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Vium1664g00031 497 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1664g00031 497 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Vium1664g00031 497 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium1664g00031 497 Gene3D Transferase(Phosphotransferase) domain 1 192 426 - -
Vium1664g00031 497 Coils Coil 78 101 - -
Vium1664g00031 497 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Vium1664g00031 497 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 443 - -
Vium1664g00031 497 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vium1664g00031 497 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1664g00031 497 CDD STKc_NDR_like 106 472 - -
Vium1664g00031 497 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium1664g00031 497 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1664g00031 Vium-Chr1664 226812 233429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1664g00031 1 484 AGC Kinase Gene Family AT5G09890 80.041 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vium1664g00031 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1664g00031 K08790 - gmx:100814085 937.176