Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1664g00030 ATGGACGGTTACGACGGAACCGTGAGGCTCGGCGCCATTAACCTCAGGCACGATCGCGCTGATTTGGACTCCGGCCCCGACGTTTCCGTCTCCTCGCCGGTCACGCGGCAGAAAGCCGCCGCCGCCAAGCAGTTCATCGAGAATCATTACAAGAACTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGGGCGCTGCAGAGGAAAGTGCAAGAATCTCAGATACCGGTTGAGGAGAAGGAGGAAATGATGAGGAACTTGGAGCGCCGAGAAACTGAGTTCATGAGGATTCAGAGACGTAAAATTGGAATTGACGATTTCGAGCAATTGACGGTGATTGGGAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACGGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGTCGCGGACAGGTGGAACATGTTCGATCCGAGAGAAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTTTATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGACGTTGCTCGCTTCTACATCGCTGAAAGCATTCTTGCTATTAACTCGATACATCAACACAACTATGTACATAGGGATATTAAACCAGATAACCTGATACTGGACAAAAATGGTCATTTGAAGCTTTCGGACTTTGGCTTATGTAAGCCTCTTGACGATAAGTATTCAACAATTTTATTGGAAAATGAAGATCTTACCAGTCAAGAATCAACCAGTGAAACTGAAGGATATTCTGCTTCTCCTTGGTTGATGCCAAAGGAGCAATTACAGCAGTGGAAACGTAATCGACGTGCATTGGCGTACTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGATGATCCAAGGATGGCCTGCCGAAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCAGAAGAACCTAAGATATCAGTAGAAGCAAAGGATTTGATCTTTCGCTTACTATGTGATGTGGACTCAAGACTAGGAACAAGAGGAGTAGAAGAAATAAAGGCTCATCCATGGTTCAAGGGTGTTCAGTGGGACATGCTTTATGAATTAGAGGCTGCTTATAAACCTACAGTCACTGGGGATTTAGATACTCAAAACTTTGAGAAGTTTCCTGAAGTAGATGGCCCACCATCCGTAACAGCAACTGTTGGACCTTGGCGGAAGATGCTGACATCCAAAGATAACAATTTCATTGGATATACTTTTAAGAAGTCAGACATTCTTACATCTCTTGAAAGTTCAGATGTAGATATCAGAGAAAAGGGATCATCAAAAGCCCCTTCATTGATTACCTTGTTAGGTCGGATTGATTTGCAAGATACTGTCATACCAGAATCTGACCAGAAGCCAGAAGCTTGA 1566 0.4323 MDGYDGTVRLGAINLRHDRADLDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPVEEKEEMMRNLERRETEFMRIQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAINSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDLTSQESTSETEGYSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPEEPKISVEAKDLIFRLLCDVDSRLGTRGVEEIKAHPWFKGVQWDMLYELEAAYKPTVTGDLDTQNFEKFPEVDGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDILTSLESSDVDIREKGSSKAPSLITLLGRIDLQDTVIPESDQKPEA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1664g00030 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vium1664g00030 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 457 - -
Vium1664g00030 521 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Vium1664g00030 521 CDD MobB_NDR_LATS-like 42 103 - -
Vium1664g00030 521 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1664g00030 521 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vium1664g00030 521 Gene3D Transferase(Phosphotransferase) domain 1 192 426 - -
Vium1664g00030 521 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium1664g00030 521 Gene3D Phosphorylase Kinase; domain 1 106 437 - -
Vium1664g00030 521 Coils Coil 78 101 - -
Vium1664g00030 521 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1664g00030 521 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Vium1664g00030 521 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1664g00030 521 CDD STKc_NDR_like 106 472 - -
Vium1664g00030 521 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium1664g00030 521 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Vium1664g00030 521 SUPERFAMILY Protein kinase-like (PK-like) 86 460 IPR011009 -
Vium1664g00030 521 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1664g00030 Vium-Chr1664 226085 233428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1664g00030 1 509 AGC Kinase Gene Family AT5G09890 78.320 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vium1664g00030 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1664g00030 K08790 - gmx:100814085 987.252