Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1664g00014 ATGGCTGCCAGCAGTGAGCAAACAGTTCCTCTTTCGGTGCTCCTGAAGCGTGAATTGGCTCATGAGAAAATTGAGAATCCTGAGATTGTCCATGGTCAAGCTGGCCAAAGCAAGAAAGGGGAGGATTTAACACTGGTAAAAGCAGAATGCCAAAGGATGGTGGGGGATGGGGTGTCTACATATTCAGTTTTTGGGATGTTTGATGGACACAATGGATCTGCTGCTGCTATTTATACTAAGGAGAATCTTCTAAATAATGTTTTAAGCGCAATTCCTCCGGATCTTAACAGAAATGAATGGGTAGCAGCACTGCCCAGGGCTTTAGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGGACAAAAATCTGGAACAACGGTCACCTTTGTGATTATAGAAGATCACAGGCTAGACACGAATGAAGAGGAAAGAGTGCGGATCACCTCTAGCGGTGGTGAAGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCACGATCTATTGGAGATATGGATGTTGGTGAATTTATTGTCCCTGTACCGCATGTAAAGCAAGTGAAGTTGTCCACTGGTGGAGGCCGACTTGTTATCTGCAGTGATGGTGTTTGGGATTCTCTGCCTGCAGAAGTAGCACTTGATTGTTGTCGTGGAATGTCACCTGATGCCGCAGCACCACATATTGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATGTATTACCTCAGGAGAAACCACCTGTTTCTGCACCACAAACAAAGAAGCCAGTGAAGGGAATGCTCAAGTCCATGTTTCGTAGAAAGTCTTCTGAATCATCTTCTTATAACGACAAAGATTACGTTGAGCCAGATGTTGTAGTGGAATTGTATGAAGAAGGATCTGCTATGCTTTCAGAGAGGTTCCATACTAAATATCCAGTCTGCAACATGTTTAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATAAAACCTGGAGAGGGCATTTCAATACATGAGGGTGAATCCGACTCCGGAAAATTTCGTCCCTGGGACGGACCTTTTCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATCAGGTAGAGTTAGCAGTGGAAGTGACGACTGA 1200 0.445 MAASSEQTVPLSVLLKRELAHEKIENPEIVHGQAGQSKKGEDLTLVKAECQRMVGDGVSTYSVFGMFDGHNGSAAAIYTKENLLNNVLSAIPPDLNRNEWVAALPRALVAGFVKTDKDFQEKGQKSGTTVTFVIIEDHRLDTNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTGGGRLVICSDGVWDSLPAEVALDCCRGMSPDAAAPHIVKEAVQAKGLRDDTTCIVVDVLPQEKPPVSAPQTKKPVKGMLKSMFRRKSSESSSYNDKDYVEPDVVVELYEEGSAMLSERFHTKYPVCNMFKLFMCAVCQVEIKPGEGISIHEGESDSGKFRPWDGPFLCSSCQEKKEAMEGKRSSGRVSSGSDD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1664g00014 399 Gene3D - 139 269 IPR036457 -
Vium1664g00014 399 ProSiteProfiles PPM-type phosphatase domain profile. 40 264 IPR001932 -
Vium1664g00014 399 PANTHER PROTEIN PHOSPHATASE 136 263 IPR015655 GO:0004722|GO:0006470
Vium1664g00014 399 SUPERFAMILY PP2C-like 31 264 IPR036457 -
Vium1664g00014 399 MobiDBLite consensus disorder prediction 380 399 - -
Vium1664g00014 399 Gene3D - 29 138 IPR036457 -
Vium1664g00014 399 Pfam Protein phosphatase 2C 142 248 IPR001932 -
Vium1664g00014 399 CDD PP2Cc 35 264 IPR001932 -
Vium1664g00014 399 SMART PP2C_4 20 262 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1664g00014 Vium-Chr1664 63922 68963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1664g00014 7 398 PP2C-type Phosphatase Gene Family AT1G47380 72.684 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1664g00014 - - gmx:100816201 691.419