Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1664g00013 ATGGCTGCCAGCAGTGAGCAAACAGTTCCTCTTTCGGTGCTCCTGAAGCGTGAATTGGCTCATGAGAAAATTGAGAATCCTGAGATTGTCCATGGTCAAGCTGGCCAAAGCAAGAAAGGGGAGGATTTAACACTGGTAAAAGCAGAATGCCAAAGGATGGTGGGGGATGGGGTGTCTACATATTCAGTTTTTGGGATGTTTGATGGACACAATGGATCTGCTGCTGCTATTTATACTAAGGAGAATCTTCTAAATAATGTTTTAAGCGCAATTCCTCCGGATCTTAACAGAAATGAATGGGTAGCAGCACTGCCCAGGGCTTTAGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGGACAAAAATCTGGAACAACGGTCACCTTTGTGATTATAGAAGGTTGGGTTGTAACAGTTGCATCAGTTGGCGATTCCCGTTGTGTACTTGAATCTTCTGATGGTGAGATTTATTACTTGTCTGCAGATCACAGGCTAGACACGAATGAAGAGGAAAGAGTGCGGATCACCTCTAGCGGTGGTGAAGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCACGATCTATTGGAGATATGGATGTTGGTGAATTTATTGTCCCTGTACCGCATGTAAAGCAAGTGAAGTTGTCCACTGGTGGAGGCCGACTTGTTATCTGCAGTGATGGTGTTTGGGATTCTCTGCCTGCAGAAGTAGCACTTGATTGTTGTCGTGGAATGTCACCTGATGCCGCAGCACCACATATTGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATGTATTACCTCAGGAGAAACCACCTGTTTCTGCACCACAAACAAAGAAGCCAGTGAAGGGAATGCTCAAGTCCATGTTTCGTAGAAAGTCTTCTGAATCATCTTCTTATAACGACAAAGATTACGTTGAGCCAGATGTTGTAGTGGAATTGTATGAAGAAGGATCTGCTATGCTTTCAGAGAGGTTCCATACTAAATATCCAGTCTGCAACATGTTTAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATAAAACCTGGAGAGGGCATTTCAATACATGAGGGTGAATCCGACTCCGGAAAATTTCGTCCCTGGGACGGACCTTTTCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATCAGGTAGAGTTAGCAGTGGAAGTGACGACTGA 1284 0.4439 MAASSEQTVPLSVLLKRELAHEKIENPEIVHGQAGQSKKGEDLTLVKAECQRMVGDGVSTYSVFGMFDGHNGSAAAIYTKENLLNNVLSAIPPDLNRNEWVAALPRALVAGFVKTDKDFQEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGEIYYLSADHRLDTNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTGGGRLVICSDGVWDSLPAEVALDCCRGMSPDAAAPHIVKEAVQAKGLRDDTTCIVVDVLPQEKPPVSAPQTKKPVKGMLKSMFRRKSSESSSYNDKDYVEPDVVVELYEEGSAMLSERFHTKYPVCNMFKLFMCAVCQVEIKPGEGISIHEGESDSGKFRPWDGPFLCSSCQEKKEAMEGKRSSGRVSSGSDD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1664g00013 427 SMART PP2C_4 20 290 IPR001932 -
Vium1664g00013 427 CDD PP2Cc 35 292 IPR001932 -
Vium1664g00013 427 ProSiteProfiles PPM-type phosphatase domain profile. 40 292 IPR001932 -
Vium1664g00013 427 PANTHER PROTEIN PHOSPHATASE 46 291 IPR015655 GO:0004722|GO:0006470
Vium1664g00013 427 SMART PP2C_SIG_2 45 292 IPR001932 -
Vium1664g00013 427 FunFam probable protein phosphatase 2C 12 31 298 - -
Vium1664g00013 427 Gene3D - 29 298 IPR036457 -
Vium1664g00013 427 Pfam Protein phosphatase 2C 53 276 IPR001932 -
Vium1664g00013 427 MobiDBLite consensus disorder prediction 408 427 - -
Vium1664g00013 427 SUPERFAMILY PP2C-like 31 292 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1664g00013 Vium-Chr1664 63922 68963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1664g00013 7 426 PP2C-type Phosphatase Gene Family AT1G47380 77.672 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1664g00013 - - gmx:100816201 761.14