Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1662g00015 ATGGAGTCACTGGGAGCGTTGGATCGAAAGCATGGAAAGAGGCCACTTCCTTTGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGCGTTTCCGTTTTATTTTTCTCGATCTAAGCAAGACGTGTCAGCTGTGGTATCAGCCCTTGTTCAAGTCATTGGTGGCAATCCACTGCCCGAAGATCCAACCACACTTTCTCACTCCACTGCTGTTCAGAATAATTCGAACGAACCATCACATCCACCACAACACCAAGGAAGCGCAAGAAAACAATACAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTGGGAACTTTTCCCACCGCGGAGGCTGCTGCACTTGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCATCTCTCAGGGGAATTAGGTTACCTCACAAATCGTCCACCATCGTTACAAGCCTCTTCAACTCCCTTCCAACTGCTTCCTCGTCACACTCCAACTGACAATGATGCCATTCTTTCTTCCTCTTCTTCGCCATCGTCTTCAACCTTTTCGATGAACTCCGCAGCTTCTTCTTCCGAGCCTCCTACCAAACGGAAACCTGATTTCGATGCCAAACAAAAACTACATTAA 678 0.4779 MESLGALDRKHGKRPLPLEEEEEEEEEKAFPFYFSRSKQDVSAVVSALVQVIGGNPLPEDPTTLSHSTAVQNNSNEPSHPPQHQGSARKQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGSKAKLNFPEKVHLSGELGYLTNRPPSLQASSTPFQLLPRHTPTDNDAILSSSSSPSSSTFSMNSAASSSEPPTKRKPDFDAKQKLH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1662g00015 225 SMART rav1_2 90 153 IPR001471 GO:0003700|GO:0006355
Vium1662g00015 225 MobiDBLite consensus disorder prediction 156 225 - -
Vium1662g00015 225 FunFam Ethylene-responsive transcription factor 2 89 148 - -
Vium1662g00015 225 PANTHER DNA-BINDING DOMAIN 50 205 IPR044808 GO:0003700|GO:0009873
Vium1662g00015 225 Gene3D AP2/ERF domain 89 149 IPR036955 GO:0003700|GO:0006355
Vium1662g00015 225 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Vium1662g00015 225 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Vium1662g00015 225 SUPERFAMILY DNA-binding domain 90 148 IPR016177 GO:0003677
Vium1662g00015 225 MobiDBLite consensus disorder prediction 160 210 - -
Vium1662g00015 225 MobiDBLite consensus disorder prediction 60 85 - -
Vium1662g00015 225 ProSiteProfiles AP2/ERF domain profile. 90 147 IPR001471 GO:0003700|GO:0006355
Vium1662g00015 225 CDD AP2 89 148 IPR001471 GO:0003700|GO:0006355
Vium1662g00015 225 MobiDBLite consensus disorder prediction 54 96 - -
Vium1662g00015 225 Pfam AP2 domain 90 139 IPR001471 GO:0003700|GO:0006355
Vium1662g00015 225 MobiDBLite consensus disorder prediction 1 18 - -
Vium1662g00015 225 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1662g00015 Vium-Chr1662 133926 141872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1662g00015 11 187 AP2-EREBP Transcription Factor Family AT5G61890 51.042 2.77e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1662g00015 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1662g00015 - - vra:106766671 372.089