Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1662g00011 ATGCCTTTTCAAATCATGGATCGCAGGGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCGATATCCATTAATGATCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGAAGCATTTTGAACAGTACACAACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCCCAGGCTAGTCTACCTGGGGATAGTATAGATTCCAAGGAATCATTGAATTATCGCCCCAAATCATTCTCTGATGCATCTCTGCAGTCGGCATCTACCTCATATGGCTTAATTGGGAACAAGATTGTGAGCAATGCTGGCCCCTGTGAAAGTAGTTTATTCTCGAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATAGGACTATTACTGCTGGTTTCCCGGAGGAACCATGTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAATTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGCGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGCTTTTAAAGGAAAACTTCCATTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTTGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGACTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATTTATGAATATCCAGAAATGAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAATCTGCTCTTCGTGCTTTGAATAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGTCATCCTAGTTTGATGCACCAGTCACATAAGGGCCAAGATGAGCGAGATTTGGGTCAGAGTATTATGGACAGTTTACCATTAAGACCAAAGGCAACAGGGTCTTCTGGAGTAATTGGATCTGGGGTCTTGGAAAATGGATATAATCAGAGGTTTCAATCTGCACTGCGACAACCTATTAATGCATTTATGGATAATTCATTCATTAATGTGAACAACTCTAGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAGGTGTCTGGAGTTTCTGAGTCTAATGGCTATATTGATGCAATGAAATTTGCATCTAGTTCAAGATTTCATCCTCATTCCTTACCCGAGTACCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATACAGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACATAGCAGAATTTAATGCGGGAGGAAATGGCATACGCCCACATGGACTTTATCATATGTGGAACAGCTCCGATTTGCAACAACAACCTTCATCGAATAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCAAACCTTCCACAGATATCAAGCTTTGCTAGAACACCCCCACATTTGCTGAGAACACCACATATGATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGCTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCACGTTGGTGGGAGTGGCACTGAACTGACATCCACTGCAGGGCAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGCAAGGCATCCCATGTCTTCAATGTCAAAATTTGATACTACCAATGACCGAATGAGAAACCTTTATCACCGTAGAAACGAATCAAGCACCAACAATGTTGACAAGAAGCAATACGAGCTTGATCTAGGTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAAATGCTTCTTGCTGCAATAGATGAGCAATGCAAGGGAACTTACGATTTCCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATCCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAGCGATGCCGTCCTATCCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGTGCCAACATCAGACTGCGAGCCGGAAAATCTCGGATCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTTTGGCAAGTGGAGAAGAGTGTGGTAATGGGATAGACACTTCAAAAAACTAA 2838 0.42 MPFQIMDRRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNSTQPLDVNAKAGLLMSQASLPGDSIDSKESLNYRPKSFSDASLQSASTSYGLIGNKIVSNAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDRTITAGFPEEPCKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTIDDFEDFDLFSSGGGMEMEGDEHLSSGKIMNGLDGDYGFFGAFKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIMDSLPLRPKATGSSGVIGSGVLENGYNQRFQSALRQPINAFMDNSFINVNNSSIHNTVRGASAGKVSGVSESNGYIDAMKFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNTGAGATEASDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSSDLQQQPSSNNVLWQKSPSFVNDACSPNLPQISSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGSGTELTSTAGQNSPKQLSHVFPARHPMSSMSKFDTTNDRMRNLYHRRNESSTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRAGKSRIGGEENRSQGSPSALASGEECGNGIDTSKN 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1662g00011 945 CDD RRM3_MEI2_like 779 864 IPR034454 -
Vium1662g00011 945 SUPERFAMILY RNA-binding domain, RBD 249 407 IPR035979 GO:0003676
Vium1662g00011 945 PANTHER RNA RECOGNITION MOTIF-CONTAINING 79 910 - -
Vium1662g00011 945 FunFam MEI2-like protein 5 isoform 2 241 335 - -
Vium1662g00011 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Vium1662g00011 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Vium1662g00011 945 Gene3D - 336 429 IPR012677 -
Vium1662g00011 945 CDD RRM1_MEI2_like 251 326 IPR034453 -
Vium1662g00011 945 MobiDBLite consensus disorder prediction 910 945 - -
Vium1662g00011 945 SMART rrm1_1 778 854 IPR000504 GO:0003723
Vium1662g00011 945 SMART rrm1_1 338 406 IPR000504 GO:0003723
Vium1662g00011 945 SMART rrm1_1 253 321 IPR000504 GO:0003723
Vium1662g00011 945 Pfam RNA recognition motif 2 776 872 IPR007201 -
Vium1662g00011 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Vium1662g00011 945 SUPERFAMILY RNA-binding domain, RBD 778 863 IPR035979 GO:0003676
Vium1662g00011 945 Gene3D - 246 335 IPR012677 -
Vium1662g00011 945 FunFam Protein MEI2-like 1 336 428 - -
Vium1662g00011 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1662g00011 Vium-Chr1662 98970 106777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1662g00011 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 1.95e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1662g00011 - - gmx:106798747 1659.04