Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1662g00009 ATGCCTTTTCAAATCATGGATCGCAGGGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCGATATCCATTAATGATCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGAAGCATTTTGAACAGTACACAACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCCCAGGCTAGTCTACCTGGGGATAGTATAGATTCCAAGGAATCATTGAATTATCGCCCCAAATCATTCTCTGATGCATCTCTGCAGTCGGCATCTACCTCATATGGCTTAATTGGGAACAAGATTGTGAGCAATGCTGGCCCCTGTGAAAGTAGTTTATTCTCGAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATAGGACTATTACTGCTGGTTTCCCGGAGGAACCATGTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAATTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGCGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGCTTTTAAAGGAAAACTTCCATTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTTGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGACTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATTTATGAATATCCAGAAATGAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAATCTGCTCTTCGTGCTTTGAATAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGTCATCCTAGTTTGATGCACCAGTCACATAAGGGCCAAGATGAGCGAGATTTGGGTCAGAGTATTATGGACAGTTTACCATTAAGACCAAAGGGGTCTTCTGGAGTAATTGGATCTGGGGTCTTGGAAAATGGATATAATCAGAGGTTTCAATCTGCACTGCGACAACCTATTAATGCATTTATGGATAATTCATTCATTAATGTGAACAACTCTAGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAGGTGTCTGGAGTTTCTGAGTCTAATGGCTATATTGATGCAATGAAATTTGCATCTAGTTCAAGATTTCATCCTCATTCCTTACCCGAGTACCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATACAGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACATAGCAGAATTTAATGCGGGAGGAAATGGCATACGCCCACATGGACTTTATCATATGTGGAACAGCTCCGATTTGCAACAACAACCTTCATCGAATAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCAAACCTTCCACAGATATCAAGCTTTGCTAGAACACCCCCACATTTGCTGAGAACACCACATATGATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGCTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCACGTTGGTGGGAGTGGCACTGAACTGACATCCACTGCAGGGCAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGCAAGGCATCCCATGTCTTCAATGTCAAAATTTGATACTACCAATGACCGAATGAGAAACCTTTATCACCGTAGAAACGAATCAAGCACCAACAATGTTGACAAGAAGCAATACGAGCTTGATCTAGGTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAAATGCTTCTTGCTGCAATAGATGAGCAATGCAAGGGAACTTACGATTTCCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATCCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAGCGATGCCGTCCTATCCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGTGCCAACATCAGACTGCGAGCCGGAAAATCTCGGATCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTTTGGCAAGTGGAGAAGAGTGTGGTAATGGGATAGACACTTCAAAAAACTAA 2832 0.4198 MPFQIMDRRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNSTQPLDVNAKAGLLMSQASLPGDSIDSKESLNYRPKSFSDASLQSASTSYGLIGNKIVSNAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDRTITAGFPEEPCKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTIDDFEDFDLFSSGGGMEMEGDEHLSSGKIMNGLDGDYGFFGAFKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIMDSLPLRPKGSSGVIGSGVLENGYNQRFQSALRQPINAFMDNSFINVNNSSIHNTVRGASAGKVSGVSESNGYIDAMKFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNTGAGATEASDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSSDLQQQPSSNNVLWQKSPSFVNDACSPNLPQISSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGSGTELTSTAGQNSPKQLSHVFPARHPMSSMSKFDTTNDRMRNLYHRRNESSTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRAGKSRIGGEENRSQGSPSALASGEECGNGIDTSKN 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1662g00009 943 MobiDBLite consensus disorder prediction 908 943 - -
Vium1662g00009 943 PANTHER RNA RECOGNITION MOTIF-CONTAINING 79 908 - -
Vium1662g00009 943 Gene3D - 336 429 IPR012677 -
Vium1662g00009 943 SMART rrm1_1 338 406 IPR000504 GO:0003723
Vium1662g00009 943 SMART rrm1_1 253 321 IPR000504 GO:0003723
Vium1662g00009 943 SMART rrm1_1 776 852 IPR000504 GO:0003723
Vium1662g00009 943 Pfam RNA recognition motif 2 774 870 IPR007201 -
Vium1662g00009 943 SUPERFAMILY RNA-binding domain, RBD 249 408 IPR035979 GO:0003676
Vium1662g00009 943 CDD RRM3_MEI2_like 777 862 IPR034454 -
Vium1662g00009 943 CDD RRM1_MEI2_like 251 326 IPR034453 -
Vium1662g00009 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Vium1662g00009 943 Gene3D - 246 335 IPR012677 -
Vium1662g00009 943 SUPERFAMILY RNA-binding domain, RBD 776 861 IPR035979 GO:0003676
Vium1662g00009 943 FunFam Protein MEI2-like 1 336 428 - -
Vium1662g00009 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Vium1662g00009 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Vium1662g00009 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Vium1662g00009 943 FunFam MEI2-like protein 5 isoform 2 241 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1662g00009 Vium-Chr1662 98969 106777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1662g00009 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 2.08e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1662g00009 - - gmx:106798747 1652.49