Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1662g00008 ATGGTAGCATCACCAGGAAGCATTTTGAACAGTACACAACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCCCAGGCTAGTCTACCTGGGGATAGTATAGATTCCAAGGAATCATTGAATTATCGCCCCAAATCATTCTCTGATGCATCTCTGCAGTCGGCATCTACCTCATATGGCTTAATTGGGAACAAGATTGTGAGCAATGCTGGCCCCTGTGAAAGTAGTTTATTCTCGAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATAGGACTATTACTGCTGGTTTCCCGGAGGAACCATGTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAATTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGCGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGCTTTTAAAGGAAAACTTCCATTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTTGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGACTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATTTATGAATATCCAGAAATGAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAATCTGCTCTTCGTGCTTTGAATAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGTCATCCTAGTTTGATGCACCAGTCACATAAGGGCCAAGATGAGCGAGATTTGGGTCAGAGTATTATGGACAGTTTACCATTAAGACCAAAGGCAACAGGGTCTTCTGGAGTAATTGGATCTGGGGTCTTGGAAAATGGATATAATCAGAGGTTTCAATCTGCACTGCGACAACCTATTAATGCATTTATGGATAATTCATTCATTAATGTGAACAACTCTAGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAGGTGTCTGGAGTTTCTGAGTCTAATGGCTATATTGATGCAATGAAATTTGCATCTAGTTCAAGATTTCATCCTCATTCCTTACCCGAGTACCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATACAGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACATAGCAGAATTTAATGCGGGAGGAAATGGCATACGCCCACATGGACTTTATCATATGTGGAACAGCTCCGATTTGCAACAACAACCTTCATCGAATAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCAAACCTTCCACAGATATCAAGCTTTGCTAGAACACCCCCACATTTGCTGAGAACACCACATATGATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGCTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCACGTTGGTGGGAGTGGCACTGAACTGACATCCACTGCAGGGCAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGCAAGGCATCCCATGTCTTCAATGTCAAAATTTGATACTACCAATGACCGAATGAGAAACCTTTATCACCGTAGAAACGAATCAAGCACCAACAATGTTGACAAGAAGCAATACGAGCTTGATCTAGGTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAAATGCTTCTTGCTGCAATAGATGAGCAATGCAAGGGAACTTACGATTTCCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATCCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAGCGATGCCGTCCTATCCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGTGCCAACATCAGACTGCGAGCCGGAAAATCTCGGATCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTTTGGCAAGTGGAGAAGAGTGTGGTAATGGGATAGACACTTCAAAAAACTAA 2697 0.4197 MVASPGSILNSTQPLDVNAKAGLLMSQASLPGDSIDSKESLNYRPKSFSDASLQSASTSYGLIGNKIVSNAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDRTITAGFPEEPCKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTIDDFEDFDLFSSGGGMEMEGDEHLSSGKIMNGLDGDYGFFGAFKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIMDSLPLRPKATGSSGVIGSGVLENGYNQRFQSALRQPINAFMDNSFINVNNSSIHNTVRGASAGKVSGVSESNGYIDAMKFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNTGAGATEASDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSSDLQQQPSSNNVLWQKSPSFVNDACSPNLPQISSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGSGTELTSTAGQNSPKQLSHVFPARHPMSSMSKFDTTNDRMRNLYHRRNESSTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRAGKSRIGGEENRSQGSPSALASGEECGNGIDTSKN 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1662g00008 898 FunFam Protein MEI2-like 1 289 381 - -
Vium1662g00008 898 Gene3D - 289 382 IPR012677 -
Vium1662g00008 898 Gene3D - 199 288 IPR012677 -
Vium1662g00008 898 SMART rrm1_1 291 359 IPR000504 GO:0003723
Vium1662g00008 898 SMART rrm1_1 206 274 IPR000504 GO:0003723
Vium1662g00008 898 SMART rrm1_1 731 807 IPR000504 GO:0003723
Vium1662g00008 898 MobiDBLite consensus disorder prediction 862 898 - -
Vium1662g00008 898 CDD RRM3_MEI2_like 732 817 IPR034454 -
Vium1662g00008 898 Pfam RNA recognition motif 2 729 825 IPR007201 -
Vium1662g00008 898 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 278 IPR000504 GO:0003723
Vium1662g00008 898 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 363 IPR000504 GO:0003723
Vium1662g00008 898 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 357 IPR000504 GO:0003723
Vium1662g00008 898 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 271 IPR000504 GO:0003723
Vium1662g00008 898 SUPERFAMILY RNA-binding domain, RBD 731 816 IPR035979 GO:0003676
Vium1662g00008 898 FunFam MEI2-like protein 5 isoform 2 194 288 - -
Vium1662g00008 898 SUPERFAMILY RNA-binding domain, RBD 202 360 IPR035979 GO:0003676
Vium1662g00008 898 CDD RRM1_MEI2_like 204 279 IPR034453 -
Vium1662g00008 898 PANTHER RNA RECOGNITION MOTIF-CONTAINING 50 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1662g00008 Vium-Chr1662 98969 106777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1662g00008 203 356 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 2.02e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1662g00008 - - gmx:106798747 1571.99