Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1662g00002 ATGCATTTCGCGAATCTCGATGACACTCCGATGTTCCGTCAACAGATGCAGTGTTTGGAGGAAAGTGCAGAATCGTTGCGTGTGAGATGCTGCAAGTTCTATAAAGGATGTCGAAAGTATATGGAAGGTCTTGGAGAGGCATATGATGGGGACATCGCATTTGCAAGTGCCATAGAAAACTTCGGAGGCGGGGAGAATGATCCTCATTTTATTGCTTTGGGAGGACCTGTTTTGACCAAATATACTCTAGCATTGAGAGAAATCAGTACATACAAGGAACTGCTCCGGTTACAAGTAGAGTACATTTTCAATCATCGGTTACAACCGATTGTCAATGTTGACATCAATGAAGTCAAGGAAGCTCGTAAACGTTTTGATAAATCCTCCCTTGTATATGATCAGGCACGTGAAAAATTTATGTCACTCAGAAAAAGTACTAAGATTGACATTGCCACTGTCATTGAAGAGGAACTGCAGGAGGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATTTGGTTGGCACTCTTAATAACGTTGAGGTGAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATTTTCGATACTTTCAACAGGGGTATCAGCTATTGCATCAGATGGAACCTTTCATCAATGAGATTATGGATTATGTACATCAGTCAAGAGAAAATTACAATAACGAACAGATTCAACTTTATCAAAGAATGCAAGACTACAAGAAACAAGCTTATGAAGAAAGTAGGTTGTCCTTGAGTGGTCCCTATGGTTCTCTTCTTGGAGACTCTACACATCCATTTTCTAGGATATCAAATGAGGCAGCAGATGTAGTAATGGAATCTGCTGCGAATGGAAAGGTTCAAATCATTCGGCAAGGGCATCTTTCAAAACGATCCTCCAATTTGAGAGCTGATTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGGGGAATGTTGTACTACTACCGCAAGCCATGGAGCGGGTCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGCGGCATTGAAAATGGTTCTGGAATTCTAAGTCGATGGCTTTCTTCTCATTACCATGGAGGCGTTCATGATGAAAGATCCATAGCACGTCATACAGTTAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTGAGATTCTGCTTCAGGATTATTTCGCCTACAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGCAAAAGATAAATGGAGTAATTGCTACCTTGTTGACTGTCCAGACACTGGGAACGCCTCCCTCAGCTGACTCAGAAAACGACGACTCTCACTCTGATGACAATATTGAAAAGTCAGAAAGTTATCCAGATGATGATCATGCTTTGAGAACGAAGTCTGCATTGAATAAAACCACCCGTACTAAGCACTTACGTTCGTCTAGAAGTATGAACTTACATACACACACTCTGAGAATTGAAAAGCCAATTGATGTTCTTAGAAGTGTGAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGAGTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGGGTACATATATCAAAAGTAAGATCGCTGACACTCGATGTTAAAGTTTGGGATTCCTCAGTCTTAAGTATGCTTAAATCACTAGGCAATCTTTTTTCAAACTCAGTTTGGGAGGAGTTGTTGCATTCACAGGGTAATTTGCAAACTGTAGACACCCTTGCTAGTTCATCCAAGGAAAATGAAGAGGAGATATTCCATGCAAGAAAGCCAAAACATGATGATCCGATTTTAGTAAAGGAAATGTTCATTCATGCAAAGTATTGTGAGAAAATATTTATTCCCCGGATCACGGAAAGCCACCCTATCCATTCACTAGCGCAACAGTTGCAGGAAAGCATCTGTGCAAATGACAAAAAAGCAGTGTACCGGCTTATTGTTAAGTCGAATGTTGACGTCAATGCCATCCGTTGTCAAGCATTGTCTGGTGACGATTTGGACATGGCTTCAAGTAATTCAAACATTGCATCTCAAAGTGAAAATCAGGTCGTTGAGGACGTAAAAGATGGCTCTAGCGCGCTTCACCTGGCTTGCCTAAATAGTGACATTGGCATGGTGGAGCTACTCCTACAGCTTGGGGCAGATATAAATGCTTCCGATTCTAGAGGTCGGACACCACTTCATTGTTCTATTATTGGAGGGAAGAATGCAGCTGCAAAAGTGCTTATCTCGAGGGGAGCCAATACATATGTGGCAGATAAAGAAGGCAACACTCCTATTAAGCTTGCATCAGAATCCATCTGCGTTGACAAAGAAATTATCAATCTCTTGACAAGCAGATAA 2412 0.4146 MHFANLDDTPMFRQQMQCLEESAESLRVRCCKFYKGCRKYMEGLGEAYDGDIAFASAIENFGGGENDPHFIALGGPVLTKYTLALREISTYKELLRLQVEYIFNHRLQPIVNVDINEVKEARKRFDKSSLVYDQAREKFMSLRKSTKIDIATVIEEELQEARASFEEARFNLVGTLNNVEVKKRFEFLEAVTGIMDAHFRYFQQGYQLLHQMEPFINEIMDYVHQSRENYNNEQIQLYQRMQDYKKQAYEESRLSLSGPYGSLLGDSTHPFSRISNEAADVVMESAANGKVQIIRQGHLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWSGSYGSNQPSPKRNSGIENGSGILSRWLSSHYHGGVHDERSIARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAENAVDQMDWMQKINGVIATLLTVQTLGTPPSADSENDDSHSDDNIEKSESYPDDDHALRTKSALNKTTRTKHLRSSRSMNLHTHTLRIEKPIDVLRSVSGNDKCADCGKPEPEWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMLKSLGNLFSNSVWEELLHSQGNLQTVDTLASSSKENEEEIFHARKPKHDDPILVKEMFIHAKYCEKIFIPRITESHPIHSLAQQLQESICANDKKAVYRLIVKSNVDVNAIRCQALSGDDLDMASSNSNIASQSENQVVEDVKDGSSALHLACLNSDIGMVELLLQLGADINASDSRGRTPLHCSIIGGKNAAAKVLISRGANTYVADKEGNTPIKLASESICVDKEIINLLTSR 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1662g00002 803 Pfam PH domain 294 427 IPR001849 -
Vium1662g00002 803 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 644 IPR001164 GO:0005096
Vium1662g00002 803 Pfam Putative GTPase activating protein for Arf 502 615 IPR001164 GO:0005096
Vium1662g00002 803 SUPERFAMILY ArfGap/RecO-like zinc finger 498 638 IPR037278 -
Vium1662g00002 803 Gene3D Arf GTPase activating protein 479 643 IPR038508 -
Vium1662g00002 803 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vium1662g00002 803 SMART ANK_2a 745 774 IPR002110 GO:0005515
Vium1662g00002 803 SMART ANK_2a 712 741 IPR002110 GO:0005515
Vium1662g00002 803 CDD BAR_SFC_plant 15 215 IPR035670 -
Vium1662g00002 803 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Vium1662g00002 803 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Vium1662g00002 803 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Vium1662g00002 803 ProSiteProfiles Ankyrin repeat region circular profile. 745 777 - -
Vium1662g00002 803 CDD ArfGap 502 631 - -
Vium1662g00002 803 SUPERFAMILY Ankyrin repeat 656 802 IPR036770 -
Vium1662g00002 803 Pfam Ankyrin repeats (3 copies) 717 800 IPR002110 GO:0005515
Vium1662g00002 803 Gene3D - 285 436 IPR011993 -
Vium1662g00002 803 ProSiteProfiles Ankyrin repeat profile. 745 777 IPR002110 GO:0005515
Vium1662g00002 803 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vium1662g00002 803 MobiDBLite consensus disorder prediction 437 487 - -
Vium1662g00002 803 SMART PH_update 293 430 IPR001849 -
Vium1662g00002 803 ProSiteProfiles Ankyrin repeat profile. 712 744 IPR002110 GO:0005515
Vium1662g00002 803 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Vium1662g00002 803 SUPERFAMILY PH domain-like 203 428 - -
Vium1662g00002 803 SMART arf_gap_3 499 644 IPR001164 GO:0005096
Vium1662g00002 803 MobiDBLite consensus disorder prediction 445 472 - -
Vium1662g00002 803 Coils Coil 227 247 - -
Vium1662g00002 803 Gene3D - 687 799 IPR036770 -
Vium1662g00002 803 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Vium1662g00002 803 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vium1662g00002 803 CDD PH_ACAP 295 432 - -
Vium1662g00002 803 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 481 645 - -
Vium1662g00002 803 ProSiteProfiles Ankyrin repeat region circular profile. 712 743 - -
Vium1662g00002 803 PANTHER CENTAURIN/ARF 5 801 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1662g00002 Vium-Chr1662 28074 46120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1662g00002 505 585 C2H2 Transcription Factor Family AT4G21160 52.439 1.01e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1662g00002 K12489 - gmx:100792517 1264.21