Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1662g00001 ATGGCGTCGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGTAAAGCAGAGAACAGTTCCGGTGGCTTCAACGGCTGCAACGATGTTAGGAACGCTGGAGGAGAGCTTCAGAATGCTTCTTCCTCATCATCCGCCAGAGACGCGGAAACAGCGCTTTACAGGGAGCTATGGCACGCGTGCGCGGGTCCGCTGGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATTGAGCAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCGAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACAGACGAGGTGTTTGCCCAAGTAACCTTACTTCCTGAGCCAAATCAAGACGAGAATGCGGTGGAGAAGGAGGGTCCTCCGGCACCGCCTCCCCGGTTTCACGTCCATTCGTTTTGTAAGACACTTACGGCTTCTGATACGAGTACGCACGGTGGATTTTCGGTGTTGAGACGACATGCTGATGAATGCCTTCCCCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGGCACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGAGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAACGTTCCCTCCTCGGTTATCTCGAGCCACAGTATGCATCTTGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGAACCATGTTTACCGTGTATTACAAACCTAGGACTAGTCCAGCCGAATTTATAGTTCCGTATGATCAATACATGGATTCACTAAAAAACAATTACACCATCGGGATGCGCTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACCGGTACCATTGTGGGAATAGAAGATGCTGATCAAAAAAGGTGGCCTAACTCCAAATGGAGAAGCCTTAAGGTGAGGTGGGATGAAACTTCTAACGTACCTCGTCCTGAGAGAGTTTCCCAATGGAAAATAGAGCCCGCTCTCGCTCCTCCTGCTCTTAACCCTTTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCTGATTCCTCTGTTCTTACCCGTGAAGCATCATCTAAAGTGAGTGTGGACCCTTTGCCAGCAAGTGGATTCCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGTAAATTTTGCCGAAAGCAATGAATCTGATACGGCAGAGAAGTCTGCATGGTCATCTGCTGCAGACGATGAAAAGTTTGATGTTGTTTCCACCTCTAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCACGAACCAACTTATCCAGATCTGCTTTCTGGCTTTGGGGTTCATGGAGATCAGGCTTCCCATCCATCGTTGGTTGATCAAAATGGTCCTGTAGCTAACCTTAGTAGAAAACATTTTTTTGACCGCGAAGGCAAACATAATGTTCTTAGTCCTTGGCCTGTAGTGCCATCTAGTCTATCACTCAATCTATTGGACTCTAATACAAAAGTCTCTGCTCAAGGTGGTGATCAAGTTCGAGGGAATTTGAGATTTAGCAGTGCATTTGGTGACTATACTGTGCTTCATGGACACAAAGTTGATCATTCGCACGGAAACTTTTTGATGCCACCACCACTGTCAACTCAATATGAGAGCCCTCGTTCTAGAGAACTGTTACCCAAACCAATATCAGGAAAACCTTCTGAGGTATCAAAACCGAAGGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCTCTGGACCCTTCTGTATCACAAAGAAATGTTGCAATCGAGCCAGTTGGTCACATGCATACCACACATCAACAGCGGACATATGAAAATGACCCAAAGTCTGAGAATTCAAGGGGATCGAAACCGGCTGATGGTGTGCTGATTGACGACCATGAAAAGCCTGCGCAAACTTCTCAGCCACATCTGAAAGATGTTCAACCCAAATCTAATGGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCGGTGGACCTCACAAAATTCAGTGCATATGATGAATTAATTGCTGAATTGGATGAGCTATTTGAATTCGGAGGTGAATTAACCTCTCCCCAAAAAGATTGGCTTATTGTCTACACTGATAATGAGGGCGATATGATGCTTGTTGGTGATGATCCTTGGCAGGAATTTGTTGCTATGGTACGAAAAATTTATATCTATCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTAAGTTCAAGGAACGAAGAGAATCAATCGGCTAGTGAAGGTGCAGACGCTCAACAAGAAAATAAATGTCAGCTGAATCATTCAGCTTCAGAGGCCTGA 2559 0.4721 MASSEVSIKGNSVNGKAENSSGGFNGCNDVRNAGGELQNASSSSSARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMDSLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADQKRWPNSKWRSLKVRWDETSNVPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPASGFQRVLQGQELSTLRVNFAESNESDTAEKSAWSSAADDEKFDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGVHGDQASHPSLVDQNGPVANLSRKHFFDREGKHNVLSPWPVVPSSLSLNLLDSNTKVSAQGGDQVRGNLRFSSAFGDYTVLHGHKVDHSHGNFLMPPPLSTQYESPRSRELLPKPISGKPSEVSKPKDSDCKLFGISLLSSPIALDPSVSQRNVAIEPVGHMHTTHQQRTYENDPKSENSRGSKPADGVLIDDHEKPAQTSQPHLKDVQPKSNGGSARSCTKVHKKGIALGRSVDLTKFSAYDELIAELDELFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSRNEENQSASEGADAQQENKCQLNHSASEA 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1662g00001 852 Gene3D - 156 261 IPR015300 -
Vium1662g00001 852 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Vium1662g00001 852 Gene3D - 322 392 - -
Vium1662g00001 852 FunFam Auxin response factor 723 817 - -
Vium1662g00001 852 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Vium1662g00001 852 FunFam Auxin response factor 322 394 - -
Vium1662g00001 852 Gene3D - 724 817 - -
Vium1662g00001 852 MobiDBLite consensus disorder prediction 1 24 - -
Vium1662g00001 852 MobiDBLite consensus disorder prediction 712 729 - -
Vium1662g00001 852 MobiDBLite consensus disorder prediction 411 426 - -
Vium1662g00001 852 CDD B3_DNA 157 259 IPR003340 GO:0003677
Vium1662g00001 852 MobiDBLite consensus disorder prediction 392 432 - -
Vium1662g00001 852 MobiDBLite consensus disorder prediction 670 730 - -
Vium1662g00001 852 SUPERFAMILY DNA-binding pseudobarrel domain 155 288 IPR015300 -
Vium1662g00001 852 MobiDBLite consensus disorder prediction 602 638 - -
Vium1662g00001 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 817 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium1662g00001 852 MobiDBLite consensus disorder prediction 816 852 - -
Vium1662g00001 852 FunFam Auxin response factor 157 261 - -
Vium1662g00001 852 Pfam AUX/IAA family 715 816 IPR033389 -
Vium1662g00001 852 MobiDBLite consensus disorder prediction 393 409 - -
Vium1662g00001 852 ProSiteProfiles PB1 domain profile. 728 810 IPR000270 GO:0005515
Vium1662g00001 852 SMART B3_2 159 261 IPR003340 GO:0003677
Vium1662g00001 852 SUPERFAMILY CAD & PB1 domains 729 805 - -
Vium1662g00001 852 MobiDBLite consensus disorder prediction 677 711 - -
Vium1662g00001 852 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1662g00001 Vium-Chr1662 1959 7103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1662g00001 1 838 B3 DNA Binding Superfamily AT5G62000 65.122 0.0 1091
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium1662g00001 AUX_IAA 1.6e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1662g00001 - - gmx:100815956 1476.46