Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1656g00003 ATGGCTGATCCCTACTCCAATTTTTTCTCATCCTCTTCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACCACAACTTCATCAACCACTCCAAAACAACCGACACCACTTTTTTCCACTACCACCACCACCACAACCATACTTCTTCCACAACTGCAACTTTTTCTTCCTTTCCACCTTCCCCTCCTTTGAGAGAAGAACTACCCCTTCTGAGACTCAGTCCGGCCAAGCAAGAGGAGGAGGAGGAGGACCTGTCTTGCACTGGACCCATGGATGTGGAGGAGAGGATGCACATCCACCCCAAAGAGGAAGAAGATGACGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCCGTCCTCTCTTCTTCCTCGGAGACCACTGACAAAGATCATGGAGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCTCCGGGGTGCAGAAACAACATTGATCACCCGAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATTAAACCTTTCATGTGCAGGAAATGCGGTAAGGCTTTTGCGGTGAGGGGCGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTCTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGAATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAACAAGATAACGATGATTCCACACAGTGA 1050 0.4819 MADPYSNFFSSSSFFRFNHHFPSSNPSPHAPYVHHNFINHSKTTDTTFFHYHHHHNHTSSTTATFSSFPPSPPLREELPLLRLSPAKQEEEEEDLSCTGPMDVEERMHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1656g00003 349 MobiDBLite consensus disorder prediction 135 162 - -
Vium1656g00003 349 SMART c2h2final6 271 291 IPR013087 -
Vium1656g00003 349 SMART c2h2final6 187 209 IPR013087 -
Vium1656g00003 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Vium1656g00003 349 Gene3D Classic Zinc Finger 249 324 - -
Vium1656g00003 349 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Vium1656g00003 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
Vium1656g00003 349 PANTHER ZINC FINGER PROTEIN WIP2 39 345 IPR043584 GO:0003700|GO:0010468
Vium1656g00003 349 SUPERFAMILY beta-beta-alpha zinc fingers 252 291 IPR036236 -
Vium1656g00003 349 Gene3D Classic Zinc Finger 186 209 - -
Vium1656g00003 349 FunFam Zinc finger protein WIP2 240 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1656g00003 Vium-Chr1656 43311 46184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1656g00003 1 346 C2H2 Transcription Factor Family AT3G57670 61.140 2.40e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1656g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1656g00003 - - gmx:100802907 565.459