Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1655g00012 ATGAGAGTTCCCTCATCCCAACAGCCCAATACCCATTCTCCCAACCCAAACCTCCTCCTCCACACCACCACCACCACCAACACCACCTTCACCTACGAACCCACCTCCGTCCTCGACCTCTGCCGCAGCCCCAGTCCCGAAAAGAAACCAACTGTCCCCAAACCAGAACCCCAACACAACCTCACCACCACTACCACCACCGCTACCACAACCAATACCAACAACAGCCTAGACCTGGACGATCATGTCTTGCCAAATTCCGATTGGTGGGAGTCCATCATGAAGGACCTGGCCTTACCCGAAGATTCTCCCACAACCCTCTCCAAGCCTAACAACATCAATCCATGCATCCCTGATTTTCCACCTTCTCATGACCCACCCTTTGATCACCCTCCCGACTTCACCTCGCTTTCAGAAATTTACAACCAAAACCTCCCCTACAACTACACCACCACCAACCCTTTGGACCATTCCTTTCACGACCTCAACCACCACCACCACAACCCCACCATCAACGTTAACAACTGGGACTTCATCGAAGAGCTTATCCGCGCCGCCGATTGCTTCGACAACAGTCACTTCCAACTGGCTCAAGCCATACTCGAACGCCTCAACAGCCGCCTCATTCGCTCACCCATGGCCAAACCGCTCCACCGAGCCGCGTTTCACTTCAAAGATGCTCTCCATTCCATTCTCTCCGGTTCCAACCGTGCCGCTTCCAACCGCCTCTCCTCCATGGCCGAGATTGTTCAAACCATCAAAACTTTCAAGGCCTTCTCGGGAATCTCTCCCATCCCAATGTTCTCTATCTTCACCACCAACCAGGCCTTGCTAGAAACCCTAAACGGATCCTCCTTTGTGCACGTCATCGATTTCGAAATCGGGCTCGGGATCCAATACGCCTCCCTCATGAAAGAGATCGCGGAGAAGGCCGCCGGCGCTTCGCTGCTCCTCCGCATCACGGCAGTCGTGCCAGAGGAGTACGCCGTGGAGAGCCGCCTCGTCCGCGAGAATCTCAACCAATTTGCGCATGACCTCGGAATCCGCGTTCAGGTGGACTTCGTCCCGCTTCGGACCTTCGAGGCGGTGTCATTCAAGGCGGTAAGGTTCGTCGACGGCGAAAAGATCGCGGTGCTGCTGTCGCCGGCGATCTTTTGCCGCCTCGGATCCGTTGGCGCCAGCGTCGGCGCGTTCCTCGCCGACGTGAGGAGGATGGCGCCCGGAGTGGTGGTGTTCGTGGACGGCGAGGGGTGGACGGAGGCTACCGCTGCGGCCTCTTTTCGGCGAGGCGTGGTGAACAGCTTGGAATTTTACTCCATGATGCTGGACTCGCTGGATGCGTCTGTGGCGGCCGGGGGAGGCGGCGAGTGGGTGAGGAGGATCGAGATGCTTCTTCTGCGGCCGAAGATCTTCGCAGCGGTGGAAAGCGCAAGGAGGAGGTCACCAGCGTGGAGGGAGGCATTTTACGGCGCCGGAATGAGGCCAGTGCAGCTGAGCCAATTCGCCGATTATCAAGCGGAGTGTTTGCTGGCGAAGGTGCAAATCAGAGGGTTCCACGTGGAAAAACGACATGCTGAATTGGTGCTCTGCTGGCACGAACGAGCCATGGTTTCCACGTCAGCCTGGCGGTGCTAG 1635 0.5731 MRVPSSQQPNTHSPNPNLLLHTTTTTNTTFTYEPTSVLDLCRSPSPEKKPTVPKPEPQHNLTTTTTTATTTNTNNSLDLDDHVLPNSDWWESIMKDLALPEDSPTTLSKPNNINPCIPDFPPSHDPPFDHPPDFTSLSEIYNQNLPYNYTTTNPLDHSFHDLNHHHHNPTINVNNWDFIEELIRAADCFDNSHFQLAQAILERLNSRLIRSPMAKPLHRAAFHFKDALHSILSGSNRAASNRLSSMAEIVQTIKTFKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAAGASLLLRITAVVPEEYAVESRLVRENLNQFAHDLGIRVQVDFVPLRTFEAVSFKAVRFVDGEKIAVLLSPAIFCRLGSVGASVGAFLADVRRMAPGVVVFVDGEGWTEATAAASFRRGVVNSLEFYSMMLDSLDASVAAGGGGEWVRRIEMLLLRPKIFAAVESARRRSPAWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVEKRHAELVLCWHERAMVSTSAWRC 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1655g00012 544 MobiDBLite consensus disorder prediction 56 79 - -
Vium1655g00012 544 Pfam GRAS domain family 179 543 IPR005202 -
Vium1655g00012 544 ProSiteProfiles GRAS family profile. 169 543 IPR005202 -
Vium1655g00012 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 165 538 IPR005202 -
Vium1655g00012 544 MobiDBLite consensus disorder prediction 1 22 - -
Vium1655g00012 544 MobiDBLite consensus disorder prediction 38 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1655g00012 Vium-Chr1655 140849 145779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1655g00012 77 543 GRAS Transcription Factor Family AT4G36710 51.423 1.86e-156 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium1655g00012 GRAS 4e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1655g00012 - - gmx:100785004 860.136