Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1655g00010 ATGGGGGCTGGGGAAGAGAGCACAACTAAACCTTCAAAGTCATCTTCATCAGTTCAGGAGACACCAACAGTGCCTTCATATCCTGATTGGTCAAGCTCCATGCAGGCCTATTATTCTCCTGGAGCCACTCCACCCCCCTTTTTTGCCTCAACTGTTGCTTCACCAACTCCCCATCCCTTTTTATGGGGAAGCCAGCATCCCTTGATGCCGCCATATGGGACTCCAGTTCCATATCCAGCTTTATATCCTCCTGGGAGTATCTATCCTCATCCAAGCATGGCAGTGACTCCGAGTGTTATCCAGCAAAGTACGGAGATTGAAGGGAAGGGAGCTGATGGAAAGGATCGAGACTCGTCGAAAAAATTGAAAGGAACTTCTGCAAATACAGGTTCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATGTCGCAAAGTGGTGAAAGTGGTTCGGAGGGTTCATCAAATGCCAGTGATGAGAATACTAACCAACAGGAATCAGCTACAAACAAGAAGGGAAGCTTTGACTTGATGCTTGTCGATGGAGCCAATGCCCAGAACAATTCTGCGGGTGCCATTTCTCAATCTTCTGTGCCTGGAAAGCCTGTTGTCTCAATGCCAGCTACTAATCTTAATATTGGAATGGACTTATGGAACCCCTCATCTGGTGGTGCAGAAGCTGCAAAAATGAGACATAATCAATCGGGTGCCCCAGGAGTTGTTGCCCTTGGTGAACAATGGATACAAGATGAACGTGAGCTGAAAAGACAGAAGAGGAAACAGTCGAACAGAGAGTCAGCTAGGAGGTCAAGGTTACGCAAGCAGGCTGAGTGCGAAGACTTACAAAAGAGGGTGGAGACACTGGGAAGTGAGAATCGAAAACTCAGAGAAGAGCTTCAGAGACTTTCTGAAGAATGCGAGAAGCTTACATCTGAAAATAATTCAATCAAGGAAGAGTTGGAACGGATGTGTGGGCCAGAAGCAGTTGCTGACCTTGGATGA 1017 0.4749 MGAGEESTTKPSKSSSSVQETPTVPSYPDWSSSMQAYYSPGATPPPFFASTVASPTPHPFLWGSQHPLMPPYGTPVPYPALYPPGSIYPHPSMAVTPSVIQQSTEIEGKGADGKDRDSSKKLKGTSANTGSKAGESGKAGSGSGNDGMSQSGESGSEGSSNASDENTNQQESATNKKGSFDLMLVDGANAQNNSAGAISQSSVPGKPVVSMPATNLNIGMDLWNPSSGGAEAAKMRHNQSGAPGVVALGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEDLQKRVETLGSENRKLREELQRLSEECEKLTSENNSIKEELERMCGPEAVADLG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1655g00010 338 MobiDBLite consensus disorder prediction 123 177 - -
Vium1655g00010 338 CDD bZIP_plant_GBF1 261 311 IPR045314 GO:0003700|GO:0006355
Vium1655g00010 338 SUPERFAMILY Leucine zipper domain 259 315 IPR046347 GO:0003700|GO:0006355
Vium1655g00010 338 MobiDBLite consensus disorder prediction 7 39 - -
Vium1655g00010 338 MobiDBLite consensus disorder prediction 258 282 - -
Vium1655g00010 338 MobiDBLite consensus disorder prediction 70 86 - -
Vium1655g00010 338 MobiDBLite consensus disorder prediction 186 208 - -
Vium1655g00010 338 Pfam bZIP transcription factor 256 318 IPR004827 GO:0003700|GO:0006355
Vium1655g00010 338 SMART brlzneu 256 320 IPR004827 GO:0003700|GO:0006355
Vium1655g00010 338 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 333 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium1655g00010 338 MobiDBLite consensus disorder prediction 1 243 - -
Vium1655g00010 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 258 321 IPR004827 GO:0003700|GO:0006355
Vium1655g00010 338 Coils Coil 269 324 - -
Vium1655g00010 338 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 263 278 IPR004827 GO:0003700|GO:0006355
Vium1655g00010 338 Gene3D - 259 313 - -
Vium1655g00010 338 FunFam BZIP transcription factor 258 309 - -
Vium1655g00010 338 Pfam G-box binding protein MFMR 1 93 IPR012900 -
Vium1655g00010 338 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1655g00010 Vium-Chr1655 118661 123791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1655g00010 1 337 bZIP Transcription Factor Family AT4G36730 53.982 6.67e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1655g00010 MFMR 8.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1655g00010 K09060 - gmx:778124 580.867