Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1655g00008 ATGGCGCAAGAGCGTCGATTCGTCTCTCTCTGCGACCCTGCTCTCATCCTCCATCTCTCACTATCAATGCTTGGTTCCGCTTACACTGAAAGTGACGATGATGCTATCCAAGAAGATGATGATGATTTTGTCTTCGACATAGATCCTGCCGTGTTAGTGGATACTCGTAAACTTATAATTGATGAACAGATCGCAGAAGGGTTGCATTCAATTGTCTACAAAGGATGGTATGAACTGAATCCTGTATCTATAAAGGTTATGCTTCCAATGCAAACATCAAATGTTCCTTCTTCTTGTAAAGCAAAATTTCAGCGGGAGGTTAACTTGATATCCAAAATTAAACATAAAAATATAATAAAGTTTATTGGCGCTTCTGTGGAGCCAACAATGATGATAATTACAGAACTTTTGGAAGGTTGTTCGCTACATAAATACCTAGAGAGCATTTATCCAAATGCTCTTAGTTTAGAGCAATCCATAAGTTTTGCTTTGGATATTTCTCAAGCCATGGAGTATCTGCATGCAAATGGCATAATTCACCGCGATCTAAAACCTGGTAATTTGGTTCTTCCCAAAGACAAAATGCAAATATTACTTACAAACTTTGAGACAGCTAGAGAGGAGATATCTGGTGAGATGACTTCTGAGGCTGGTACATATCGATACATGGCTCCTGAGTTATTCAGCAAGGATCCACTTTCTAAAGGAGCCAAGAAATGCTATGACCATAAAGTAGACGTCCATAGCTTTGCTATGGTTCTATGGGCAATAGTTAAAAACCAGATTCCATTTAAAGGAAGGAGTGACTTGCTGGCAGCATATGCTACTGCAAAAAAGATGAGGCCTAGTTTGGAGGGTTTTCCAGAAGTTCTACTTCCATTGCTGCAGTCTTGTTGGGCAGAAGACCCAAAGCTACGACCTGAATTCTCAGAGATCTCGCAAATCCTTGAAAACCTTCTCCATAACTATCACTCAACAGGTATATCAGCTGAGGAAAAAGCATGTCCAACTACAAGTGTGCAGGAACTTTTCCCCAATTATGTTGAAGACAACTCAGAACATGAACATGAACATGAGACTCAGAATCTGAATACCAGTGTCTGCTTGGAGGGACAATCTGAGGTCATAACACAAAACTCTAGTCCAGTCTTAGCCCAAACCAAGCACAAAAGGACTCTTAAGAAGTGCAAGGGTTTATGGTTATGCTTTCGAAAATGCTTTCACATTGGTTAA 1233 0.4015 MAQERRFVSLCDPALILHLSLSMLGSAYTESDDDAIQEDDDDFVFDIDPAVLVDTRKLIIDEQIAEGLHSIVYKGWYELNPVSIKVMLPMQTSNVPSSCKAKFQREVNLISKIKHKNIIKFIGASVEPTMMIITELLEGCSLHKYLESIYPNALSLEQSISFALDISQAMEYLHANGIIHRDLKPGNLVLPKDKMQILLTNFETAREEISGEMTSEAGTYRYMAPELFSKDPLSKGAKKCYDHKVDVHSFAMVLWAIVKNQIPFKGRSDLLAAYATAKKMRPSLEGFPEVLLPLLQSCWAEDPKLRPEFSEISQILENLLHNYHSTGISAEEKACPTTSVQELFPNYVEDNSEHEHEHETQNLNTSVCLEGQSEVITQNSSPVLAQTKHKRTLKKCKGLWLCFRKCFHIG 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1655g00008 410 SUPERFAMILY Protein kinase-like (PK-like) 52 329 IPR011009 -
Vium1655g00008 410 Pfam Protein tyrosine and serine/threonine kinase 60 316 IPR001245 GO:0004672|GO:0006468
Vium1655g00008 410 ProSiteProfiles Protein kinase domain profile. 58 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1655g00008 410 Gene3D Transferase(Phosphotransferase) domain 1 139 364 - -
Vium1655g00008 410 Gene3D Phosphorylase Kinase; domain 1 45 138 - -
Vium1655g00008 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vium1655g00008 410 SMART serkin_6 58 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1655g00008 410 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1655g00008 Vium-Chr1655 102799 108856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1655g00008 40 325 MAP Kinase Kinase Kinase AT5G66710 52.962 9.93e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium1655g00008 PK_Tyr_Ser-Thr 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1655g00008 - K04427 vum:124848543 676.396