Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1655g00007 ATGAATAATCGACTTGAAAGCCAAATGATGCTCTTCTCTCACCAATATCCTGGTGCATTCACTGAAGTAACTCCTCCTCAACAAGGCAAAGAAGCCAAGCCAAGACGCAAGAGAAATAAAAATGGTGCTGCGGCCACCCCCAAGAAGAGAAAGCTCACTGCCGACCAAGTTAGTCTTCTCGAGAAAAATTTCTGCAGTGAACAGAAACTTGAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAGACCAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAAAATGTTCACGAAACCACCATGCTTCAGAAGTGCCACCTTGAGACTCGGGTATTAAAGCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGTTACAAGAGCGTGATGAAAGAGCCGCAAGCAAAGATTTGCTGGAAGCTGTCAACCCACCATTTCCTGAAGAGTTTAGGGTGGAAGAATATGATTATGGTGATGTTTTCTACATTCCGGAGACTCATTACATCAATGGAATGGAGTGGATTAATCTCTACATGTGA 603 0.4378 MNNRLESQMMLFSHQYPGAFTEVTPPQQGKEAKPRRKRNKNGAAATPKKRKLTADQVSLLEKNFCSEQKLESERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLLEAKKEIQQLQERDERAASKDLLEAVNPPFPEEFRVEEYDYGDVFYIPETHYINGMEWINLYM 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1655g00007 200 FunFam homeobox-leucine zipper protein ATHB-40 42 111 - -
Vium1655g00007 200 CDD homeodomain 48 104 IPR001356 GO:0003677
Vium1655g00007 200 Gene3D - 39 111 - -
Vium1655g00007 200 SMART HOX_1 46 107 IPR001356 GO:0003677
Vium1655g00007 200 Pfam Homeodomain 48 101 IPR001356 GO:0003677
Vium1655g00007 200 SUPERFAMILY Homeodomain-like 48 111 IPR009057 -
Vium1655g00007 200 Coils Coil 130 157 - -
Vium1655g00007 200 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Vium1655g00007 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 153 IPR045224 GO:0003700
Vium1655g00007 200 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Vium1655g00007 200 MobiDBLite consensus disorder prediction 17 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1655g00007 Vium-Chr1655 93077 94760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1655g00007 1 200 Homeobox Transcription Factor Family AT4G36740 46.330 9.35e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium1655g00007 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1655g00007 K09338 - gmx:100803948 263.462