Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1652g00031 ATGGCAGTGGTGAGTCCTGTGCTTGCAACATCACAAAGGATGGGTTCTGTGAGGTCACCTTCTGATGCTAGTGGGGAAATTTTGGAGGAGCCTAATCCAGGTGTGGTTGATCAGCCAATCTATGTTGCTGTGGCAAAAGAAGTGAAGGAGAGCAGATCAAATCTGATATGGGCAATACAACACTCCGAAGGAAAGAGGATTTGCATTCTTTATGTTCATGTTCGTGCAACAATGATCCCCCTATTGGGAGGTAAATTCCCTACAAGTGCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAAGAAAAGCAAGACATGCATAGGACTCTGGATGAATATCTTCAAATCTGTCAACGGATGGGGGTGCGAGCAGAAAAATTGCATATTGAAATGGATAGCATTGAAAAAGGAATTATAGAGCTTGTATCTCAGCATGGCATCCGAAAGCTTGTAATGGGAGCAGCATCAGATAAGTACTATAATAGGAGAATGATGGACCTTAGATCTAAGAAAGCCATCTATGTGTGTAAGCAAGCTCCAGCTTCTTGTCACATACAGTTTATCTGCAAATGGCACCTTATACACACAAGGGATCACAGTTTGAATGAAGGTAATGTAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGAACTTTCAGATCACAGTCTGTTACACTGGGGCAAGGTCGCCGAGGAAATCTAACCAATGATGCGCTCAGAGTAAGGTCTGCCAGTGATGGACATCTAGCAAGCTTTCCAGCTGTTTCTTCTCCAGAAGAAACTGTAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCTGATGAATCAGAAAGGCTGTCAATGATGAGTCCTTCTGGCTTGTCAATATCCTCTGACAGTGCAGTTGATCTAGCTTTGACCCCAGGATTAATTACTGAAAGCAGTGAGAATGCATTAGAGTTGACTATGAGTCAGCTGGTTATAGAGGATCTTCATCATTCATCTCCTCCTAGTACACTGGATGGTGGAATAGATGATACTATCTACGACCAGCTTCAACAAGCTATGACCGAAGCGGAGGATGCTTCACTAACTGCATATAAAGAAACTGTCAGACGTAGGAATGCTGAAAAAGAAGCCTTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACGGAGGAGTTGAACCTGAGGAAATTGGCAGAGGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATGCGAAGAGACTGAGAGACAAAGTTAGGGAAGAACTCCACCTCGCCCTTGATCAGAAGGCATCTCTGGAGAGTCAGATTGCATCATCTGAACTTATCATAAAGGAGCTGGAGCAGAAGATTGTATCTGCTGTGGATCTGTTACAGAGCTACAAGAATGAACGAGAGGAATTGCAGATTCAGCGTGATAATGCTTTGAGAGAGGCTGAAGAATTGAGGAAAAAGCAAGGAGAGACCTCAAGCTCCCATGTCCCTCAATTGTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAGATAACTTCAATCCATCCTTAAAAATTGGTGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGAGTTACACTGAGGTGGCTATAAAAAGATTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGCTGAGCAAACTAAGGCATCCCAATCTTATCACACTCATTGGAGCCTGCCCAGATGCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTCGAAGATCGCCTTGCCTGCAAGGATAATACCCCTCCATTATCGTGGCAAACTCGAATCCGTGTTGCTACTGAACTATGCTCTGCCCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCGTCGAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTTAGTGACTTTGGAATATGTCGTATATTATCGAACTGTGAGAGTTCCAGTAGCAATTCTACAGAGTTTTGGAAAACTGACCCAAAAGGAACATTTGTCTACATGGATCCTGAGTTTCTTGCCTCAGGGGAACTTACTCCGAAGTCAGATGTTTATTCATTTGGAATCGTATTGTTGAGATTATTGACAGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGAAATATGCATTAGATACTGGAAAGTTGAAATCCCTTTTGGATCCTGTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAATTGGCTCGCTTGGCTTTGAGATGTTGTGATATGAACCGAAAGAGCCGTCCAGATCTTTATTCTGATGTCTGGAGGATACTTGATGCAATGAGAGTTTCTTCGGGAGGCACAAACTCCTTTGGACTAAGTTCTGAAGGACTTTCACAACCTCCGTCATATTTTATTTGCCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCAGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTAATGACAACTCACCAATGACTAATGGTAAGCTTGCACATCACAATCTTGTTCCCAATCGTGCTCTTCGCTCTGCAATCCATGACTGGCTTCAAAACCACTGA 2640 0.4345 MAVVSPVLATSQRMGSVRSPSDASGEILEEPNPGVVDQPIYVAVAKEVKESRSNLIWAIQHSEGKRICILYVHVRATMIPLLGGKFPTSALKEEQVQAYWEEEKQDMHRTLDEYLQICQRMGVRAEKLHIEMDSIEKGIIELVSQHGIRKLVMGAASDKYYNRRMMDLRSKKAIYVCKQAPASCHIQFICKWHLIHTRDHSLNEGNVEVASPLVQQVPNSVRTFRSQSVTLGQGRRGNLTNDALRVRSASDGHLASFPAVSSPEETVGFSTPRDRMGTEVSSDESERLSMMSPSGLSISSDSAVDLALTPGLITESSENALELTMSQLVIEDLHHSSPPSTLDGGIDDTIYDQLQQAMTEAEDASLTAYKETVRRRNAEKEAFEAIRKAKASESLYTEELNLRKLAEEELRKEKEELENAKRLRDKVREELHLALDQKASLESQIASSELIIKELEQKIVSAVDLLQSYKNEREELQIQRDNALREAEELRKKQGETSSSHVPQLFSEFSFSEIKEATDNFNPSLKIGEGGYGSIFKGVLSYTEVAIKRLHSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDAWALVYEYLPNGSLEDRLACKDNTPPLSWQTRIRVATELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNSTEFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIVLLRLLTGRPALGITKEVKYALDTGKLKSLLDPVAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGTNSFGLSSEGLSQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNGKLAHHNLVPNRALRSAIHDWLQNH 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1652g00031 879 Gene3D HUPs 38 185 IPR014729 -
Vium1652g00031 879 Gene3D Phosphorylase Kinase; domain 1 490 593 - -
Vium1652g00031 879 SUPERFAMILY Protein kinase-like (PK-like) 498 779 IPR011009 -
Vium1652g00031 879 Pfam U-box domain 810 879 IPR003613 GO:0004842|GO:0016567
Vium1652g00031 879 SMART serkin_6 521 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1652g00031 879 MobiDBLite consensus disorder prediction 255 296 - -
Vium1652g00031 879 Gene3D Transferase(Phosphotransferase) domain 1 594 797 - -
Vium1652g00031 879 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 50 159 - -
Vium1652g00031 879 CDD STK_N 39 191 - -
Vium1652g00031 879 FunFam receptor-like protein kinase FERONIA 484 593 - -
Vium1652g00031 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Vium1652g00031 879 CDD RING-Ubox_WDSUB1-like 810 865 - -
Vium1652g00031 879 Pfam Protein kinase domain 525 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1652g00031 879 ProSiteProfiles Protein kinase domain profile. 521 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1652g00031 879 Coils Coil 396 493 - -
Vium1652g00031 879 ProSitePatterns Protein kinases ATP-binding region signature. 527 548 IPR017441 GO:0005524
Vium1652g00031 879 SUPERFAMILY RING/U-box 803 878 - -
Vium1652g00031 879 ProSiteProfiles U-box domain profile. 808 879 IPR003613 GO:0004842|GO:0016567
Vium1652g00031 879 SMART Ubox_2 812 875 IPR003613 GO:0004842|GO:0016567
Vium1652g00031 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Vium1652g00031 879 PANTHER OS02G0152300 PROTEIN 40 873 - -
Vium1652g00031 879 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1652g00031 Vium-Chr1652 169898 177161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1652g00031 1 879 U-box Gene Family AT2G45910 52.140 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium1652g00031 Pkinase 5.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1652g00031 - - gmx:100807515 1476.07