Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1652g00029 ATGGCAGTGGTGAGTCCTGTGCTTGCAACATCACAAAGGATGGGTTCTGTGAGGTCACCTTCTGATGCTAGTGGGGAAATTTTGGAGGAGCCTAATCCAGGTGTGGTTGATCAGCCAATCTATGTTGCTGTGGCAAAAGAAGTGAAGGAGAGCAGATCAAATCTGATATGGGCAATACAACACTCCGAAGGAAAGAGGATTTGCATTCTTTATGTTCATGTTCGTGCAACAATGATCCCCCTATTGGGAGGTAAATTCCCTACAAGTGCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAAGAAAAGCAAGACATGCATAGGACTCTGGATGAATATCTTCAAATCTGTCAACGGATGGGGGTGCGAGCAGAAAAATTGCATATTGAAATGGATAGCATTGAAAAAGGAATTATAGAGCTTGTATCTCAGCATGGCATCCGAAAGCTTGTAATGGGAGCAGCATCAGATAAGTACTATAATAGGAGAATGATGGACCTTAGATCTAAGAAAGCCATCTATGTGTGTAAGCAAGCTCCAGCTTCTTGTCACATACAGTTTATCTGCAAATGGCACCTTATACACACAAGGGATCACAGTTTGAATGAAGGTAATGTAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGAACTTTCAGATCACAGTCTGTTACACTGGGGCAAGGTCGCCGAGGAAATCTAACCAATGATGCGCTCAGAGTAAGGTCTGCCAGTGATGGACATCTAGCAAGCTTTCCAGCTGTTTCTTCTCCAGAAGAAACTGTAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCTGATGAATCAGAAAGGCTGTCAATGATGAGTCCTTCTGGCTTGTCAATATCCTCTGACAGTGCAGTTGATCTAGCTTTGACCCCAGGATTAATTACTGAAAGCAGTGAGAATGCATTAGAGTTGACTATGAGTCAGCTGGTTATAGAGGATCTTCATCATTCATCTCCTCCTAGTACACTGCAGGATGGTGGAATAGATGATACTATCTACGACCAGCTTCAACAAGCTATGACCGAAGCGGAGGATGCTTCACTAACTGCATATAAAGAAACTGTCAGACGTAGGAATGCTGAAAAAGAAGCCTTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACGGAGGAGTTGAACCTGAGGAAATTGGCAGAGGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATGCGAAGAGACTGAGAGACAAAGTTAGGGAAGAACTCCACCTCGCCCTTGATCAGAAGGCATCTCTGGAGAGTCAGATTGCATCATCTGAACTTATCATAAAGGAGCTGGAGCAGAAGATTGTATCTGCTGTGGATCTGTTACAGAGCTACAAGAATGAACGAGAGGAATTGCAGATTCAGCGTGATAATGCTTTGAGAGAGGCTGAAGAATTGAGGAAAAAGCAAGGAGAGACCTCAAGCTCCCATGTCCCTCAATTGTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAGATAACTTCAATCCATCCTTAAAAATTGGTGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGAGTTACACTGAGGTGGCTATAAAAAGATTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGCTGAGCAAACTAAGGCATCCCAATCTTATCACACTCATTGGAGCCTGCCCAGATGCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTCGAAGATCGCCTTGCCTGCAAGGATAATACCCCTCCATTATCGTGGCAAACTCGAATCCGTGTTGCTACTGAACTATGCTCTGCCCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCGTCGAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTTAGTGACTTTGGAATATGTCGTATATTATCGAACTGTGAGAGTTCCAGTAGCAATTCTACAGAGTTTTGGAAAACTGACCCAAAAGGAACATTTGTCTACATGGATCCTGAGTTTCTTGCCTCAGGGGAACTTACTCCGAAGTCAGATGTTTATTCATTTGGAATCGTATTGTTGAGATTATTGACAGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGAAATATGCATTAGATACTGGAAAGTTGAAATCCCTTTTGGATCCTGTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAATTGGCTCGCTTGGCTTTGAGATGTTGTGATATGAACCGAAAGAGCCGTCCAGATCTTTATTCTGATGTCTGGAGGATACTTGATGCAATGAGAGTTTCTTCGGGAGGCACAAACTCCTTTGGACTAAGTTCTGAAGGACTTTCACAACCTCCGTCATATTTTATTTGCCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCAGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTAATGACAACTCACCAATGACTAATGGTAAGCTTGCACATCACAATCTTGTTCCCAATCGTGCTCTTCGCTCTGCAATCCATGACTGGCTTCAAAACCACTGA 2643 0.4347 MAVVSPVLATSQRMGSVRSPSDASGEILEEPNPGVVDQPIYVAVAKEVKESRSNLIWAIQHSEGKRICILYVHVRATMIPLLGGKFPTSALKEEQVQAYWEEEKQDMHRTLDEYLQICQRMGVRAEKLHIEMDSIEKGIIELVSQHGIRKLVMGAASDKYYNRRMMDLRSKKAIYVCKQAPASCHIQFICKWHLIHTRDHSLNEGNVEVASPLVQQVPNSVRTFRSQSVTLGQGRRGNLTNDALRVRSASDGHLASFPAVSSPEETVGFSTPRDRMGTEVSSDESERLSMMSPSGLSISSDSAVDLALTPGLITESSENALELTMSQLVIEDLHHSSPPSTLQDGGIDDTIYDQLQQAMTEAEDASLTAYKETVRRRNAEKEAFEAIRKAKASESLYTEELNLRKLAEEELRKEKEELENAKRLRDKVREELHLALDQKASLESQIASSELIIKELEQKIVSAVDLLQSYKNEREELQIQRDNALREAEELRKKQGETSSSHVPQLFSEFSFSEIKEATDNFNPSLKIGEGGYGSIFKGVLSYTEVAIKRLHSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDAWALVYEYLPNGSLEDRLACKDNTPPLSWQTRIRVATELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNSTEFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIVLLRLLTGRPALGITKEVKYALDTGKLKSLLDPVAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGTNSFGLSSEGLSQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNGKLAHHNLVPNRALRSAIHDWLQNH 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1652g00029 880 Gene3D HUPs 38 185 IPR014729 -
Vium1652g00029 880 PANTHER OS02G0152300 PROTEIN 40 874 - -
Vium1652g00029 880 SUPERFAMILY Protein kinase-like (PK-like) 499 780 IPR011009 -
Vium1652g00029 880 SUPERFAMILY RING/U-box 804 879 - -
Vium1652g00029 880 MobiDBLite consensus disorder prediction 255 296 - -
Vium1652g00029 880 ProSiteProfiles Protein kinase domain profile. 522 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1652g00029 880 Pfam U-box domain 811 880 IPR003613 GO:0004842|GO:0016567
Vium1652g00029 880 ProSiteProfiles U-box domain profile. 809 880 IPR003613 GO:0004842|GO:0016567
Vium1652g00029 880 Gene3D Phosphorylase Kinase; domain 1 491 594 - -
Vium1652g00029 880 Coils Coil 397 494 - -
Vium1652g00029 880 FunFam receptor-like protein kinase FERONIA 485 594 - -
Vium1652g00029 880 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 50 159 - -
Vium1652g00029 880 CDD STK_N 39 191 - -
Vium1652g00029 880 SMART serkin_6 522 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1652g00029 880 ProSitePatterns Protein kinases ATP-binding region signature. 528 549 IPR017441 GO:0005524
Vium1652g00029 880 Pfam Protein kinase domain 526 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1652g00029 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Vium1652g00029 880 Gene3D Transferase(Phosphotransferase) domain 1 595 798 - -
Vium1652g00029 880 CDD RING-Ubox_WDSUB1-like 811 866 - -
Vium1652g00029 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Vium1652g00029 880 SMART Ubox_2 813 876 IPR003613 GO:0004842|GO:0016567
Vium1652g00029 880 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1652g00029 Vium-Chr1652 169898 177161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1652g00029 1 880 U-box Gene Family AT2G45910 52.424 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium1652g00029 Pkinase 5.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1652g00029 - - gmx:100807515 1471.45