Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1652g00020 ATGGATAAAGAGAAAACCTCACAAACCCCAAGAAGAACGACAAGGTCTTTGGCTTCATCTCCGACATCCACTTCAAATAATGTAATTGCAGCAAAAGTAAATAGCCTTGAACTTTCGACAATCAACGACCTTTTAGTTGGAGGAGATCCAATCAGTCTAGATGACATAATTTCCAACTTTCCTGGTAGAAGAAACCAGATTCTTGAGATTGGGCGTCTTTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTTGTATATGGAGGCCCTTGTACTGGAAAAACCAGTGTCATTCTTCAATTGTTCAGGCATCTCAACAGGCCTCTCGTTTATTCTAGTTGTAGGACATGTTATAACCAGGGTATCTTGTTTGAATCTATTCTGAATCAGTTATTTCTCCATAGAAAAAATGCTGCCAATGGTTATGCAAATGCAAAACGCTGTGACAGACCGTCTGATTTTGTCAACTTTCTTCGGGAAGCATTGACCAATGTTATAAACAACCTCAAAGAGAAGTCAGAGAAGTTGGTCTCAAATAAGATGAGACAAGAGAAAATTGGAAACATGATCTACTTGGTTTTTGACAATTTTCATCTTGTTAGGGAATGGGATAAGAGTTCTACTATATTGCCTTTACTGTTTAATCTCTATGATATGCTAAAGATGCATGAGGTGGGTCTGATTTTTATCAGTAGTACTTCCCCAGACACATTTTACTCCAACATGGGATATGTAGAGCCTATCCCCGTTTACTTTCCTGATTATACAGAAGGTGATATTCGTCAAATATTATTAAGAAACCAAGTGAACCAAAAGCTTTATTCCTCATTTCTCGATGTAGTTCTGAAGTCTTTTTATGGAATTACAAAGCAAGTTGGTGATTTGTCTGCCGCCTTAAAGCCACTATATGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAGGGAGTTGCTCCTGATCAACAGATGAGGCGAAGGCTGCTTGCTCATATCAACCCTCATATTGGCCCCTCTTTGAATGAGATATTTAAGGTTTCATCCCTTTCTTCTACTGAAGTGGAGGCCCGGAAAGATGAAAAGCGGAAGGGAAATCCCAGGAGATTGGCGAAATCTGAAGAACTAGGCAGTCTTGATTTTCATATGTCTACTAGTGCAAAGTATCTTCTGATTTCGGCATTCCTTGCCTCCAGAAACCCAGCTACTCTTGATGCTTCTCTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGAGGAAGCCTTCTGAGAAAGCGATGGAACGGAAAGAAACTTTGGAAGAGGAGCTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGGTTGTTAGCCATCTTTCAGTGCATAGTATCAGTCGCCGAAGATGAGGAAGAACCAAACAATGATGGATTTGGAGTTGAGGGTGGCAGTGCTGGACTGATGTCTGATGTTCTTTTGCAGCTGTCTAGTCTCTGCAATGCTAATTTTATATTCAAAGGTAGAAGCTGTCCAATTGAGGGCTCAACCCGGTATCGATCAACCATTTCCGAAGATCTGGCTTTGAAGGTTGCAAGGAGCCTTAAGTTTCCATTATCAAAGTATTTGTATAGGAGTTAG 1620 0.4012 MDKEKTSQTPRRTTRSLASSPTSTSNNVIAAKVNSLELSTINDLLVGGDPISLDDIISNFPGRRNQILEIGRLLGPLNSPMLPLFVYGGPCTGKTSVILQLFRHLNRPLVYSSCRTCYNQGILFESILNQLFLHRKNAANGYANAKRCDRPSDFVNFLREALTNVINNLKEKSEKLVSNKMRQEKIGNMIYLVFDNFHLVREWDKSSTILPLLFNLYDMLKMHEVGLIFISSTSPDTFYSNMGYVEPIPVYFPDYTEGDIRQILLRNQVNQKLYSSFLDVVLKSFYGITKQVGDLSAALKPLYEKYCEPLSDKGKGVAPDQQMRRRLLAHINPHIGPSLNEIFKVSSLSSTEVEARKDEKRKGNPRRLAKSEELGSLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKAMERKETLEEELLMKGPGTFPLERLLAIFQCIVSVAEDEEEPNNDGFGVEGGSAGLMSDVLLQLSSLCNANFIFKGRSCPIEGSTRYRSTISEDLALKVARSLKFPLSKYLYRS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1652g00020 539 Pfam AAA ATPase domain 59 216 IPR041664 -
Vium1652g00020 539 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 250 536 IPR047088 -
Vium1652g00020 539 FunFam Origin of replication complex subunit 5 60 241 - -
Vium1652g00020 539 Coils Coil 155 186 - -
Vium1652g00020 539 MobiDBLite consensus disorder prediction 410 432 - -
Vium1652g00020 539 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 52 538 IPR020796 GO:0000808|GO:0005634|GO:0006260
Vium1652g00020 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 272 IPR027417 -
Vium1652g00020 539 Gene3D - 60 241 IPR027417 -
Vium1652g00020 539 MobiDBLite consensus disorder prediction 1 23 - -
Vium1652g00020 539 MobiDBLite consensus disorder prediction 405 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1652g00020 Vium-Chr1652 128225 131814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1652g00020 3 538 Core DNA Replication Machinery Family AT4G29910 57.934 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1652g00020 K02607 - gmx:100782175 925.235