Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1652g00019 ATGGATAAAGAGAAAACCTCACAAACCCCAAGAAGAACGACAAGGTCTTTGGCTTCATCTCCGACATCCACTTCAAATAATGTAATTGCAGCAAAAGTAAATAGCCTTGAACTTTCGACAATCAACGACCTTTTAGTTGGAGGAGATCCAATCAGTCTAGATGACATAATTTCCAACTTTCCTGGTAGAAGAAACCAGATTCTTGAGATTGGGCGTCTTTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTTGTATATGGAGGCCCTTGTACTGGAAAAACCAGTGTCATTCTTCAATTGTTCAGGCATCTCAACAGGCCTCTCGTTTATTCTAGTTGTAGGACATGTTATAACCAGGGTATCTTGTTTGAATCTATTCTGAATCAGTTATTTCTCCATAGAAAAAATGCTGCCAATGGTTATGCAAATGCAAAACGCTGTGACAGACCGTCTGATTTTGTCAACTTTCTTCGGGAAGCATTGACCAATGTTATAAACAACCTCAAAGAGAAGTCAGAGAAGTTGGTCTCAAATAAGATGAGACAAGAGAAAATTGGAAACATGATCTACTTGGTTTTTGACAATTTTCATCTTGTTAGGGAATGGGATAAGAGTTCTACTATATTGCCTTTACTGTTTAATCTCTATGATATGCTAAAGATGCATGAGGTGGGTCTGATTTTTATCAGTAGTACTTCCCCAGACACATTTTACTCCAACATGGGATATGTAGAGCCTATCCCCGTTTACTTTCCTGATTATACAGAAGGTGATATTCGTCAAATATTATTAAGAAACCAAGTGAACCAAAAGCTTTATTCCTCATTTCTCGATGTAGTTCTGAAGTCTTTTTATGGAATTACAAAGCAAGTTGGTGATTTGTCTGCCGCCTTAAAGCCACTATATGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAGGGAGTTGCTCCTGATCAACAGATGAGGCGAAGGCTGCTTGCTCATATCAACCCTCATATTGGCCCCTCTTTGAATGAGATATTTAAGGTTTCATCCCTTTCTTCTACTGAAGTGGAGGCCCGGAAAGATGAAAAGCGGAAGGGAAATCCCAGGAGATTGGCGAAATCTGAAGAACTAGGCAGTCTTGATTTTCATATGTCTACTAGTGCAAAGTATCTTCTGATTTCGGCATTCCTTGCCTCCAGAAACCCAGCTACTCTTGATGCTTCTCTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGAGGAAGCCTTCTGAGAAAGCGATGGAACGGAAAGAAACTTTGGAAGAGGAGCTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGGTTGTTAGCCATCTTTCAGTGCATAGTATCAGTCGCCGAAGATGAGGAAGAACCAAACAATGATGGATTTGGAGTTGAGGGTGGCAGTGCTGGACTGATGTCTGATGTTCTTTTGCAGCTGTCTAGTCTCTGCAATGCTAATTTTATATTCAAAGGTAGAAGCTGTCCAATTGAGGGCTCAACCCGGTATCGATCAACCATTTCCGAAGATCTGGCTTTGAAGATCTGCCAAGTGCTTACAACCTCTACTGTCATCAACATGAATCAGATGGAATCTCCTTAG 1629 0.4033 MDKEKTSQTPRRTTRSLASSPTSTSNNVIAAKVNSLELSTINDLLVGGDPISLDDIISNFPGRRNQILEIGRLLGPLNSPMLPLFVYGGPCTGKTSVILQLFRHLNRPLVYSSCRTCYNQGILFESILNQLFLHRKNAANGYANAKRCDRPSDFVNFLREALTNVINNLKEKSEKLVSNKMRQEKIGNMIYLVFDNFHLVREWDKSSTILPLLFNLYDMLKMHEVGLIFISSTSPDTFYSNMGYVEPIPVYFPDYTEGDIRQILLRNQVNQKLYSSFLDVVLKSFYGITKQVGDLSAALKPLYEKYCEPLSDKGKGVAPDQQMRRRLLAHINPHIGPSLNEIFKVSSLSSTEVEARKDEKRKGNPRRLAKSEELGSLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKAMERKETLEEELLMKGPGTFPLERLLAIFQCIVSVAEDEEEPNNDGFGVEGGSAGLMSDVLLQLSSLCNANFIFKGRSCPIEGSTRYRSTISEDLALKICQVLTTSTVINMNQMESP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1652g00019 542 MobiDBLite consensus disorder prediction 405 431 - -
Vium1652g00019 542 Pfam AAA ATPase domain 59 216 IPR041664 -
Vium1652g00019 542 Coils Coil 155 186 - -
Vium1652g00019 542 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 250 526 IPR047088 -
Vium1652g00019 542 FunFam Origin of replication complex subunit 5 60 241 - -
Vium1652g00019 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 272 IPR027417 -
Vium1652g00019 542 Gene3D - 60 241 IPR027417 -
Vium1652g00019 542 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 52 527 IPR020796 GO:0000808|GO:0005634|GO:0006260
Vium1652g00019 542 MobiDBLite consensus disorder prediction 1 23 - -
Vium1652g00019 542 MobiDBLite consensus disorder prediction 410 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1652g00019 Vium-Chr1652 128225 131974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1652g00019 3 529 Core DNA Replication Machinery Family AT4G29910 56.660 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1652g00019 K02607 - gmx:100782175 898.656