Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1652g00012 ATGGACTTCGTAGGCACAGTGTTGGAGATCATAATTCGCTTGTGGGACTGTTGTGCCCACGTCCGTGATTATGAAGAGAACCTTTCTTGTTTGAGGGACATGGCGTCTGACCTTCTAGGCCTTTGGGTTGACGTGAGTGTGAAGGTTCAAATGGCCGAGGACCAGCACCTGAGGCGTCTGAATGAAGTGAATGATTGGTTGGTTAAAGTTGAAGCCATGCAAAGAGAAGTTCAAGCTATTCAGCAGAGAGTTGCTCATGCTCAAGAAACACGTAGCAGATGTTTGACAAATTTTCCAACAAACTTCAGGATGGGAAGGATTGTAAGTAGAAAAATAGGTGAGATTCGTGAACTTATTGATAAAGGGCACTTTGATGTAGTGGCTCGGGAAATGCCACATGCTGTGGTAGATGAAATCCCTCTAGAGGTCACAATAGGTCTAGAATCTAGCTTTGATGAACTTAGTGAATGTTTTGATGATAATAATGTGGGAATTATTGGCTTGTTTGGAATGGGGGGTGTAGGAAAGACAACCCTGCTCAAAAAGTTCAACAATGAGTTTCTTCCCACAAAATTCTATGATGTAGTCATTTGGGTTGTGGTGTCTAAAGAAGCAGATGTAGGGAGTGTTCAACAAAGCATAGGAAACAAATTAAATGTTCCTGTTGGTAAATGGGGTGGTAAGAGCATTGATGACAGAGCTATTGTTTTATACAACTTTTTGAAGAGGAAGAAGTTTGTGTTGCTGCTAGATGATTTATGGGAGCGTATAGATCTTCTGAAGTTGGGGATTCCTCTCCCTGATACAGAAAACGGATCTAAAGTGATATTCACAACAAGGTCCATGGAGGTTTGCAGGAGCATGGAAGCCAACACATGCATCAAAGTAGAATGTTTAGCAACAAATGAAGCATTTGCATTGTTCAGAGAGAAAGTGGGTGAAGAAACTCTCAACTCTCATCCTGAAATATTTCATCTGGCCAAAATTGTGGCCAAGGAGTGTGAGGGACTTCCTTTAGCTCTCATCACAGTTGGAAGATCTATGGCTCGAAAGACTCTCCCTGAATGGAAACGAGCAGCACGAACTTTGAAGATTTATCCATCAAGATTTTCAGGTATGGTTGACTATGTTTATTGTTTGCTAGAGTTTAGCTATGACAGTTTACCAAGTGCCTCGCACAAGTCTTGTTTCTTGTACTGTTCCATCTTCCCTGAGGACTATGATATTAGAAAAGATGAACTCATTCAACTGTGGATTGGGGAAGGTCTTTTAGCTGAATTTGGTGACGATGTCTATGAAGCACGAATCCAAGGAGAGGAAATCATCGCAAGCTTGAAGTTTGCTTGTTTGTTGGAGGACAGTGAGAGAGAAAATAGGATTAAGATGCATGATGTGATCAGAGACATGGCTTTGTGGCTAGCTTGTGATCATGGATCCAATACCAGGTTCGTGGTGAGAGATGGTGCATGCAGTGGTTCAGTTGAAACATATAATCAGGCAAAGTGGAAAGAAGTAGAGAAACTATCAATGTGGCGGCATAGCATTCAGAAACTATCAGGAAAACAAGATTGCTCAAACCTCTTGACAATGCTAGTTAGAAATACCGAGATAACCAGCTTCCCAGAAGAGATCTTTCTGACTGCAAATCATCTTAGAGTGTTGGACCTGTCAGGTAATAAAAGAGTAAGAGAATTACCTTCCAGCATTGGGGAGTTAGTTCAATTGCAGCATTTGGATCTATCAGGTACTGACATACAAAATTTGCCAAGAGAGCTCCAGAACTTGAAAAATTTGAGGTGCCTGCTGCTGAATTATATTTGCAACAGGCTTGTCTTCCCAAGGAATTTGATATCAAGTTTGGTGTCATTGCAAGTGTTTAGCAAATTACCATGGGAAGATCAGTTTATTCTTCCTGACTTGGGGGAACCTGAGGAAGCTGTCTTGTTGAAAGAACTGGAATGCTTGGAATACCTTCAAGACATAAGCATTGCTCTCTTTTGCTTTTCTTCTGTGCAAGTATTGCTGAACTCTCCCAAGTTGCAAAGATGCATTAGACATCTCAGAGTACTTTCTCCATTCACTTCAACGCCACATATTATATTATTCTCACTTTTGACAAAAATGCAACATCTAGAGGTATTATCCATGTCAGTTTCTTCTCCTTCAAGTTTAGACCATGTCAGGAAAAAGGGGTCTCCATCATCACAGTGTTCTATCACAGAGTGCATTCCCATGAGTTCAAAACTTACTGAGCATGGTTACATTGTTGGCCTCCGTGAGTTATCCCTTGAAGGGTGTGACATGTTGAACTTGAATTGGCTCACTCGTGCTCAAAGCCTTCAACTCCTTAGAATATACAATTGTCCCTCCTTGGAAGAAGTCATAGGTGAAGAATTTGGCCATTCAGAAAATGTTTTTTCGAGTCTTGAAATTGTTGATCTAGATTCTTTACCAAAGTTAAGGAGCATATGCTCACAGGTTTTACAATTTCCTTGTCTTAAGGAGATCTGTGTAGCAGATTGTCCAAAGCTGATAAAGCTCCCTTTTGATTCCAATAGTGCAAGGAACAGTCTGAAGCACATTAATGGACAGAAAAGTTGGTGGCGTAAATTGCAGTGGGAAGATGAAGCCACAAGGGATCACTTTGCTTCAAGATATGTACCTTTGCGCAAAATTCGCAAAATACGTTGA 2691 0.4099 MDFVGTVLEIIIRLWDCCAHVRDYEENLSCLRDMASDLLGLWVDVSVKVQMAEDQHLRRLNEVNDWLVKVEAMQREVQAIQQRVAHAQETRSRCLTNFPTNFRMGRIVSRKIGEIRELIDKGHFDVVAREMPHAVVDEIPLEVTIGLESSFDELSECFDDNNVGIIGLFGMGGVGKTTLLKKFNNEFLPTKFYDVVIWVVVSKEADVGSVQQSIGNKLNVPVGKWGGKSIDDRAIVLYNFLKRKKFVLLLDDLWERIDLLKLGIPLPDTENGSKVIFTTRSMEVCRSMEANTCIKVECLATNEAFALFREKVGEETLNSHPEIFHLAKIVAKECEGLPLALITVGRSMARKTLPEWKRAARTLKIYPSRFSGMVDYVYCLLEFSYDSLPSASHKSCFLYCSIFPEDYDIRKDELIQLWIGEGLLAEFGDDVYEARIQGEEIIASLKFACLLEDSERENRIKMHDVIRDMALWLACDHGSNTRFVVRDGACSGSVETYNQAKWKEVEKLSMWRHSIQKLSGKQDCSNLLTMLVRNTEITSFPEEIFLTANHLRVLDLSGNKRVRELPSSIGELVQLQHLDLSGTDIQNLPRELQNLKNLRCLLLNYICNRLVFPRNLISSLVSLQVFSKLPWEDQFILPDLGEPEEAVLLKELECLEYLQDISIALFCFSSVQVLLNSPKLQRCIRHLRVLSPFTSTPHIILFSLLTKMQHLEVLSMSVSSPSSLDHVRKKGSPSSQCSITECIPMSSKLTEHGYIVGLRELSLEGCDMLNLNWLTRAQSLQLLRIYNCPSLEEVIGEEFGHSENVFSSLEIVDLDSLPKLRSICSQVLQFPCLKEICVADCPKLIKLPFDSNSARNSLKHINGQKSWWRKLQWEDEATRDHFASRYVPLRKIRKIR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1652g00012 896 Gene3D - 385 471 IPR036388 -
Vium1652g00012 896 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 47 860 - -
Vium1652g00012 896 Pfam NB-ARC domain 152 386 IPR002182 GO:0043531
Vium1652g00012 896 SUPERFAMILY L domain-like 452 863 - -
Vium1652g00012 896 Coils Coil 63 90 - -
Vium1652g00012 896 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515
Vium1652g00012 896 Gene3D - 299 384 IPR042197 -
Vium1652g00012 896 FunFam Probable disease resistance protein At1g63360 385 472 - -
Vium1652g00012 896 Gene3D - 130 298 IPR027417 -
Vium1652g00012 896 FunFam Probable disease resistance protein At5g66910 298 384 - -
Vium1652g00012 896 FunFam Probable disease resistance protein At1g61300 127 292 - -
Vium1652g00012 896 ProSiteProfiles Leucine-rich repeat profile. 574 596 IPR001611 GO:0005515
Vium1652g00012 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 400 IPR027417 -
Vium1652g00012 896 Gene3D Ribonuclease Inhibitor 486 871 IPR032675 -
Vium1652g00012 896 PRINTS Disease resistance protein signature 240 254 - -
Vium1652g00012 896 PRINTS Disease resistance protein signature 334 348 - -
Vium1652g00012 896 PRINTS Disease resistance protein signature 165 180 - -
Vium1652g00012 896 PRINTS Disease resistance protein signature 546 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1652g00012 Vium-Chr1652 94804 97531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1652g00012 145 470 WRKY Transcription Factor Family AT5G45050 25.444 4.91e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1652g00012 - K13459 vra:106758404 1694.48