Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1652g00005 ATGATGGGTAACGGGGAGTCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGATGCTGTTTGTAAGAATAGGCTGTGGGATTTGGTGGGGGAAGAGTATGGATTGGGTGTGAAGGTTGGTTCCGATGTGGAACATGTTTACAGCAAACACTTAAGTGCTCTAGAGACATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATATGGTTTAGAGGGTGATAGAGTTAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGACGATTCTGGTGAGGAGGAGGTAGGAGATGAACATGAGAGGAGGGATTGTGGCTGTCCGGATGGTAGGAAGCTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAACAGGAGAGTGCTTATAAGTATATAGATAGGAGTAAGTCATGTGGTAGTAATAGTGTGAAAGACAAGAATACAAATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACTAATAGGGTGAACGGGGTGAATCCAGATTTCAATGAGGCCAAGAAAGTTAGAAGGCCGGAACTTGTTGATTTGGACATGCTGGAGGACCACGACAAGGGTGAGCCTATTGTAGTAAAATTTTGCGGATTTAATACTGAAATGGATACACCAGAAGAGTTTGATGAGAGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAAAACAACAATAAAGATGATGATGACGAAAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACCAAAAGAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGGTTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAAGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAGTGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTACGATGATCGCGTTGAGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGAAGAGAAGTCTTTATTGGGAAAATCTACATCCGATGGAGTCTCCTCGACTTCATCGAAAACAAAAACAAAAGCTCGTGGACATTTGGAGAGAACCTCAAGTTCTCGATCTGAAGATGTTGTCGATAAGAAGTTACTTGACTCCTGTAGTCTTGATAAATATGCCCGGGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCACAACTTGTGAAAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCCAAAATTTGTAAATTCAAAATGGTGTCTTGTTGAAAGGGACCCTATTGGAAAAGGAAGACAAGATTCATGTGGCTGCCCAGTACAAGGTTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATAGAGCTGGGGGAGGCTTTTTTACAATGGAGATTAAACATGGTAGGTGAAGAAGTTAGTAGTTCTTGGACAGATGAGGATGAGAAGAAGTTCAGAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAACAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCACGCAACCTCACCTTGTTATCACCCAAAAAATCCACTGGCAAAAGGTCAAATGGCAAGTGA 1956 0.4141 MMGNGESLDLYKLFMVVKKKGGYDAVCKNRLWDLVGEEYGLGVKVGSDVEHVYSKHLSALETCLKNVAGGKFAEYGLEGDRVKFQKHLMEAHTESMLDDSGEEEVGDEHERRDCGCPDGRKLSGSNRVKCVKPESNGAEQESAYKYIDRSKSCGSNSVKDKNTNSNGNEYDNVCDYLEGRKLCGTNRVNGVNPDFNEAKKVRRPELVDLDMLEDHDKGEPIVVKFCGFNTEMDTPEEFDESKLLTVDASDAESDMLRLSDGSKNNNKDDDDESDEVLILDPSSVDQKKFGHKRKRESVSEMLIWINSIAKNPCDPAVGSVPEKSKWKSCSSQEIWKQALLFREAVFLKKDFETASEQLSWQSQKMHPSMYDDRVEALYNFRKRLKCEEKSLLGKSTSDGVSSTSSKTKTKARGHLERTSSSRSEDVVDKKLLDSCSLDKYARVHIPVGPNHQAEVPEWTGTTCESDSKWLGTQIWPPKFVNSKWCLVERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKIELGEAFLQWRLNMVGEEVSSSWTDEDEKKFRDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRSNGK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1652g00005 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 644 - -
Vium1652g00005 651 Gene3D - 1 70 IPR036431 GO:0003677
Vium1652g00005 651 SMART bright_3 2 66 IPR001606 GO:0003677
Vium1652g00005 651 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vium1652g00005 651 SMART ELM2_2 445 497 IPR000949 -
Vium1652g00005 651 MobiDBLite consensus disorder prediction 629 651 - -
Vium1652g00005 651 Pfam ARID/BRIGHT DNA binding domain 4 61 IPR001606 GO:0003677
Vium1652g00005 651 CDD ARID 4 61 - -
Vium1652g00005 651 MobiDBLite consensus disorder prediction 256 279 - -
Vium1652g00005 651 MobiDBLite consensus disorder prediction 393 422 - -
Vium1652g00005 651 MobiDBLite consensus disorder prediction 94 113 - -
Vium1652g00005 651 ProSiteProfiles ELM2 domain profile. 443 567 IPR000949 -
Vium1652g00005 651 MobiDBLite consensus disorder prediction 604 651 - -
Vium1652g00005 651 MobiDBLite consensus disorder prediction 256 270 - -
Vium1652g00005 651 MobiDBLite consensus disorder prediction 605 621 - -
Vium1652g00005 651 SUPERFAMILY ARID-like 4 72 IPR036431 GO:0003677
Vium1652g00005 651 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1652g00005 Vium-Chr1652 1819 6351 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium1652g00005 ARID 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1652g00005 - - vun:114182925 1184.09