Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1652g00003 ATGATGGGTAACGGGGAGTCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGATGCTGTTTGTAAGAATAGGCTGTGGGATTTGGTGGGGGAAGAGTATGGATTGGGTGTGAAGGTTGGTTCCGATGTGGAACATGTTTACAGCAAACACTTAAGTGCTCTAGAGACATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATATGGTTTAGAGGGTGATAGAGTTAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGACGATTCTGGTGAGGAGGAGGTAGGAGATGAACATGAGAGGAGGGATTGTGGCTGTCCGGATGGTAGGAAGCTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAACAGGAGAGTGCTTATAAGTATATAGATAGGAGTAAGTCATGTGGTAGTAATAGTGTGAAAGACAAGAATACAAATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACTAATAGGGTGAACGGGGTGAATCCAGATTTCAATGAGGCCAAGAAAGTTAGAAGGCCGGAACTTGTTGATTTGGACATGCTGGAGGACCACGACAAGGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAAAACAACAATAAAGATGATGATGACGAAAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACCAAAAGAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGGTTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAAGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAGTGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTACGATGATCGCGTTGAGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGAAGAGAAGTCTTTATTGGGAAAATCTACATCCGATGGAGTCTCCTCGACTTCATCGAAAACAAAAACAAAAGCTCGTGGACATTTGGAGAGAACCTCAAGTTCTCGATCTGAAGATGTTGTCGATAAGAAGTTACTTGACTCCTGTAGTCTTGATAAATATGCCCGGGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCACAACTTGTGAAAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCCAAAATTTGTAAATTCAAAATGGTGTCTTGTTGAAAGGGACCCTATTGGAAAAGGAAGACAAGATTCATGTGGCTGCCCAGTACAAGGTTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATAGAGCTGGGGGAGGCTTTTTTACAATGGAGATTAAACATGGTAGGTGAAGAAGTTAGTAGTTCTTGGACAGATGAGGATGAGAAGAAGTTCAGAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAACAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCACGCAACCTCACCTTGTTATCACCCAAAAAATCCACTGGCAAAAGGTCAAATGGCAAGTGA 1854 0.4164 MMGNGESLDLYKLFMVVKKKGGYDAVCKNRLWDLVGEEYGLGVKVGSDVEHVYSKHLSALETCLKNVAGGKFAEYGLEGDRVKFQKHLMEAHTESMLDDSGEEEVGDEHERRDCGCPDGRKLSGSNRVKCVKPESNGAEQESAYKYIDRSKSCGSNSVKDKNTNSNGNEYDNVCDYLEGRKLCGTNRVNGVNPDFNEAKKVRRPELVDLDMLEDHDKESDMLRLSDGSKNNNKDDDDESDEVLILDPSSVDQKKFGHKRKRESVSEMLIWINSIAKNPCDPAVGSVPEKSKWKSCSSQEIWKQALLFREAVFLKKDFETASEQLSWQSQKMHPSMYDDRVEALYNFRKRLKCEEKSLLGKSTSDGVSSTSSKTKTKARGHLERTSSSRSEDVVDKKLLDSCSLDKYARVHIPVGPNHQAEVPEWTGTTCESDSKWLGTQIWPPKFVNSKWCLVERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKIELGEAFLQWRLNMVGEEVSSSWTDEDEKKFRDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRSNGK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1652g00003 617 MobiDBLite consensus disorder prediction 210 236 - -
Vium1652g00003 617 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 610 - -
Vium1652g00003 617 SMART bright_3 2 66 IPR001606 GO:0003677
Vium1652g00003 617 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vium1652g00003 617 SUPERFAMILY ARID-like 4 72 IPR036431 GO:0003677
Vium1652g00003 617 ProSiteProfiles ELM2 domain profile. 409 533 IPR000949 -
Vium1652g00003 617 MobiDBLite consensus disorder prediction 570 617 - -
Vium1652g00003 617 CDD ARID 4 61 - -
Vium1652g00003 617 SMART ELM2_2 411 463 IPR000949 -
Vium1652g00003 617 MobiDBLite consensus disorder prediction 360 374 - -
Vium1652g00003 617 MobiDBLite consensus disorder prediction 571 587 - -
Vium1652g00003 617 MobiDBLite consensus disorder prediction 94 113 - -
Vium1652g00003 617 MobiDBLite consensus disorder prediction 210 242 - -
Vium1652g00003 617 MobiDBLite consensus disorder prediction 595 617 - -
Vium1652g00003 617 Pfam ARID/BRIGHT DNA binding domain 4 61 IPR001606 GO:0003677
Vium1652g00003 617 Gene3D - 1 70 IPR036431 GO:0003677
Vium1652g00003 617 MobiDBLite consensus disorder prediction 359 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1652g00003 Vium-Chr1652 1816 6351 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium1652g00003 ARID 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1652g00003 - - vun:114182925 1099.73