Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00036 ATGTCTTCCCCTTTCTTCCAGAGCCCATATTGGGACATGATCATGCTACAGGAGCCTTCAGAAATTTTGTTCCAATCGTTGTCATCCAATGATGTTCTTGACCCTCTACACGATTCTCTTTCCTTCGACATGGTTGACTTCTCTACAGCACCAGCAGAAGGAAAACACAAGGAGACAAAGAAATTGGTGGTGGAGTCTGAAGTGAAGAATAGGGAGAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCTGCAGAAATCAGAGACACCACAAGGAGTGGCAGACGGGTTTGGCTTGGAACCTTTGAGACTGCAGAAGCTGCTGCGTTAGCTTACGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCTGTCAAAAGAGTTAAAGAGTCTTTGCAAGAGATCCAATATACCTGCTTCAATGGCTCTTCTCCTGCACTTGCACTCAAGGCCAGGCACTGCAAGCAAAAACACTTATCCAAAGCAAAATATTGTAAAGGGAAAGAGAAATCAAAACCAAGTGTAGTGGTGTTGGAAGATTTGGGAGTTGACTATCTAGAGCAACTTCTAAGCATATCAGATCAAAGTGCAAACCCTACCTACTTCAACTAA 636 0.4371 MSSPFFQSPYWDMIMLQEPSEILFQSLSSNDVLDPLHDSLSFDMVDFSTAPAEGKHKETKKLVVESEVKNRERSYIGVRKRPWGKFAAEIRDTTRSGRRVWLGTFETAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYTCFNGSSPALALKARHCKQKHLSKAKYCKGKEKSKPSVVVLEDLGVDYLEQLLSISDQSANPTYFN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00036 211 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Vium1650g00036 211 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Vium1650g00036 211 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vium1650g00036 211 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Vium1650g00036 211 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Vium1650g00036 211 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Vium1650g00036 211 PANTHER DNA-BINDING DOMAIN 57 202 IPR044808 GO:0003700|GO:0009873
Vium1650g00036 211 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Vium1650g00036 211 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
Vium1650g00036 211 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00036 Vium-Chr1650 396431 397206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00036 69 205 AP2-EREBP Transcription Factor Family AT3G23240 56.738 2.11e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium1650g00036 AP2 9.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00036 K14516 - gmx:100812017 298.901