Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00035 ATGACTTCCCCTTTCTTCCAGAACCCATCATCAGATTGGGATATGTTGCAGGAGCCTTCAGAAATTTTGTTCGAATCATTATCAAGCAATAATGCCGTTCTTGACCCTATTCAAGATTCTCTTTCCTTCGATATGGTTGATTTCTCTACGGCACCAGCACAAGGAAATCACAACCAATTGGTGGTGAAACAAGTGCAGAATAAGGAAAAGTCATACATCGGTGTGAGGAAACGGCCTTGGGGGAAATTTGCAGCAGAGATCAGAGACACAACCAGGAATGGCTCAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAGGCTGCTGCGTTAGCCTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCAGTAAAAACGGTGAAAGAGTCTTTGCAAGAGATTCAATATAGCTTCAGCAATGGATCTTCTCCCGCACTTGCACTCAAGGAGAGGAACTTCATCCAGAGAAAATTGTTATCAAGGGCCAGAAAATGTAAAGGGAAAGAGACATCAGAAGCAGCAACACCAAGTGTTGTGGTGTTAGAGGACTTGGGAGTTGACTATCTAGAACAACTTCTAAGCATGTCTGATCAAAGTGCAAGCCCTAGCAACTTTAATTAA 639 0.4335 MTSPFFQNPSSDWDMLQEPSEILFESLSSNNAVLDPIQDSLSFDMVDFSTAPAQGNHNQLVVKQVQNKEKSYIGVRKRPWGKFAAEIRDTTRNGSRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKTVKESLQEIQYSFSNGSSPALALKERNFIQRKLLSRARKCKGKETSEAATPSVVVLEDLGVDYLEQLLSMSDQSASPSNFN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00035 212 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Vium1650g00035 212 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Vium1650g00035 212 Pfam AP2 domain 71 122 IPR001471 GO:0003700|GO:0006355
Vium1650g00035 212 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Vium1650g00035 212 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vium1650g00035 212 FunFam Ethylene-responsive transcription factor 2 70 131 - -
Vium1650g00035 212 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Vium1650g00035 212 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Vium1650g00035 212 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Vium1650g00035 212 PANTHER DNA-BINDING DOMAIN 60 204 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00035 Vium-Chr1650 381394 382137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00035 60 207 AP2-EREBP Transcription Factor Family AT3G23240 55.333 1.07e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1650g00035 AP2 7.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00035 K14516 - gmx:100811486 333.954