Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00034 ATGGAAGAGGATTCCTCTAAGGACAAAAACTTGCACACCAAGAAAGAGCCACGCTATAGAGGAGTCCGCCACCGGCCATGGGGAAAGTTCGCCGCCGAAATTCGAGACCCCGCTCGGCACGGCGGTCGAGTATGGCTCGGGACATTCCTCACGGCGGAGGAGGCTGCTAGGGCTTATGACCGTGCTGCCTTTGAGATGAGAGGTACTTCAGCCATTCTCAACTTTCCAAATGAGTATCCTTCGTCTTCTTCTTCTACCACTTCCTCTTCATCGTTACCATGTTCTTCTTCCTCATCTTCTTCAATGCTTAAAAACGATCATGGTAAACAAGTTATTGAGTTTGAGTGCTTGGATGACAAATTGTTGGAGGACCTTCTTGACTGTGATGACTATCCCTACCAGAAAGACTTGCCTAAGAAATGA 423 0.4823 MEEDSSKDKNLHTKKEPRYRGVRHRPWGKFAAEIRDPARHGGRVWLGTFLTAEEAARAYDRAAFEMRGTSAILNFPNEYPSSSSSTTSSSSLPCSSSSSSSMLKNDHGKQVIEFECLDDKLLEDLLDCDDYPYQKDLPKK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00034 140 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vium1650g00034 140 MobiDBLite consensus disorder prediction 1 15 - -
Vium1650g00034 140 MobiDBLite consensus disorder prediction 75 106 - -
Vium1650g00034 140 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vium1650g00034 140 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vium1650g00034 140 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vium1650g00034 140 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vium1650g00034 140 MobiDBLite consensus disorder prediction 1 22 - -
Vium1650g00034 140 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Vium1650g00034 140 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Vium1650g00034 140 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vium1650g00034 140 PANTHER DNA-BINDING DOMAIN 12 125 IPR044808 GO:0003700|GO:0009873
Vium1650g00034 140 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00034 Vium-Chr1650 359479 359944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00034 15 130 AP2-EREBP Transcription Factor Family AT3G23230 60.331 2.92e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium1650g00034 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00034 - - gmx:100810414 191.815