Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00032 ATGGCACTGAACAAGAATCACTCCTACAACAACAAACTTGGATATGAAGCTCTCCCACCCATCAAAGCCCTGGCTGAAACACTTCAACACCAACCACAACCTTCTTCCTCAGACTATGCTTTTCCAATATTTGTCATTGTTGTGCTCAGTATCTTAGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAATTGGCGTCAAGTTAACCCAATGAGATGGATTTCCCTCCTGAGAATGCGACACAATGAGGATCCCTTCATAGCATTCTCTCCTGCTATGTGGAACCGAGGACTTGATGAGTCTGTCATCAGAGAAATCCCAACTTTTCAGTTCATAAAAGAAGAAGGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGTTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCCTTTCATTTGGACTGCATTGACGTGTGGCTTCAGGCCAATTCCAATTGCCCCCTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTGGGAGGAGAGCCTGGAGCAGTGCTTCCACAGGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAATCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAATTTCTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTATTTGGATGCTCAAGTCATAATACAACAAAACAGGCATCAGAATGAGGCTAGTGCCAGTGAGTACTATAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTCTGGAGAATGATGTTTAG 1035 0.4271 MALNKNHSYNNKLGYEALPPIKALAETLQHQPQPSSSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISLLRMRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKEEGEDQSVYGCVVCLVEFKEHDVLKVLPNCNHAFHLDCIDVWLQANSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQERNDSRGSLAHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEYYNSRCRRAFFPFCYGKGSKNAVLPLENDV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00032 344 SMART ring_2 131 172 IPR001841 -
Vium1650g00032 344 SUPERFAMILY RING/U-box 116 178 - -
Vium1650g00032 344 PANTHER RING-H2 FINGER PROTEIN ATL16 25 341 IPR044600 GO:0016567|GO:0016740
Vium1650g00032 344 CDD RING-H2_EL5-like 131 173 - -
Vium1650g00032 344 Pfam Ring finger domain 131 173 IPR001841 -
Vium1650g00032 344 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Vium1650g00032 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 179 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00032 Vium-Chr1650 345860 347788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00032 32 307 C3H Transcription Factor Family AT1G04360 44.337 2.70e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00032 K19041 - gmx:100809883 622.854