Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00029 ATGGACAAATGCTCGGAGGCTGCATCTCCTTCTTGCAGAGGCAGGTCCAAGAAACCCTATCTCCAAAGCTCGAAGGTCCAATCGCCGAGCCCCGATCGCTTCAGCTCACAGACGCCGGAGAAACCGCCGCAGCGGATCCGTAACCGCGGCGTCGCGCTCTCTATCGCTGACATAAGAAAAGCCGGCAAACGTTTACAGGAAATGAACCCAAGCAGTGAAATGACATTGTCGCAGCAGAGCAAGAGTGTGAGGAGACAGATCTCACTGTGGCCTTCTTCTCCCAGTAAATCCAAGATTACTGATGATGAATCCTCCAAGCTTCCCGAAAAATATGAGATTTTGGATCAGTTCTTCGATCGTTTGGATACTTTGATTTCAATGTTCCGCCTCAAAGGGAAGACTCCATCCTTTACAGAGATCAGTTCTAGAATTGAATCTTTAACTGACAGGAGGTTTACTCATGGGCATCTAGCCCAATTGAAATATATCTTGCCTGAGGCTATTGTTCTTAAGAAGTTTCTTGTGCATGACGAACGGACTTGTTGTATGAAGCCGGATATTCATATTTCTTTAAACCCTGAAGCGGTAGAGTCTGATGCAAAAGGGCACCCTCAACGTAGGAGAGTGTCGTTGAAGAAGTTGTTTCAGTCCCGACTAAGGGATTTTTTGGAATCTCATCCCGAGGTTGATGAAATTCCAGAAGGAACATTGCCCGAACCATTCAGTCGCCCAAAGAAAGACAATATTTTGGACATGTTAGAAACTCGTCTCCCAACGAAATTGTCAACCTGCATGCGCTACAATGACATTGTCAATAATACAGAGTCAGCTGACATAGATGAAAAATTGTTAGTACCTATCAAGACATCAGCTGAGTTGCCTAATGAGCATTTGAAAGCACCTTCTGTCATTGCACCATCCTTTAGAGCTCGATTTTCTTTGAAATTTAAACTACATGGAGCAGATGATGTGCAACAAAATTCTCCATCAGATTCATTGCAACCTTCCCCATCTGATTTGGCTTCAGAAGCTGCCAGTAGTGTAAATTGTTCAACAAGTTGTGCATCTCTGGAATCATCCAGTGCTCTCCCTTCTACTCCAAGCAAATCCATTGTGTACACAGAAAACAAAGATGGGTCTCTCACGAGCATTGGTGCCGTCTCAACTGCCACGAGAAAAACCTTTGAGTACACCGAAAACAAAGATGGATCTCTCACCAGCATTGATGCCGTCTCAACTCCAGCTAGAGAAATCAATGAATGCACAGTAAACAAAGATGGTTCTCTTAAAAGCATTGATGCCATGTCAACCCCAGCTAAACTTATTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCATTGTGTTCACCCAAAAGACATTATATGAGCCCAGATGACCACTCTACCAGTTCTTTGAACAAGTTAGCTAGGCGTCCACCTCGCTCAAGGTCATTGAAATTTGACACTCCAGTGAAGAACAAGGAGGCTATGAATGAAGACAATACGGGTGCCTTACTAATAGATGATGACGTTTTTGACATCCTCCCTGGAAAACTTATCCAATCGATTAGGGAAAAGGAAAGAATAGCGATGGAGGAAAGGGACCCAGCTATCACTCAAGCAAAGAAAAGGAAAAAAATGATAGCAAACCTCCCTAAGCTGTTTGATATGATTCGCCTCTTGCTTCGACAGCGTAATTGTATCACGAAAGTGGAGCTTGTGAGCAAAATAATCTCAAGCCACAGCGATATTGTTGATAGAAGTGAAGTTGAAGAGCAGCTAAGTTTGTTGCAAGAACTAACACCGGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGGGATTTTCTAATATTCATAAACAAACTGTTGAGCCCTGAAACCATTCGAGCATGTCTTGAAGAAGCAACGTAG 1914 0.4363 MDKCSEAASPSCRGRSKKPYLQSSKVQSPSPDRFSSQTPEKPPQRIRNRGVALSIADIRKAGKRLQEMNPSSEMTLSQQSKSVRRQISLWPSSPSKSKITDDESSKLPEKYEILDQFFDRLDTLISMFRLKGKTPSFTEISSRIESLTDRRFTHGHLAQLKYILPEAIVLKKFLVHDERTCCMKPDIHISLNPEAVESDAKGHPQRRRVSLKKLFQSRLRDFLESHPEVDEIPEGTLPEPFSRPKKDNILDMLETRLPTKLSTCMRYNDIVNNTESADIDEKLLVPIKTSAELPNEHLKAPSVIAPSFRARFSLKFKLHGADDVQQNSPSDSLQPSPSDLASEAASSVNCSTSCASLESSSALPSTPSKSIVYTENKDGSLTSIGAVSTATRKTFEYTENKDGSLTSIDAVSTPAREINECTVNKDGSLKSIDAMSTPAKLISTPIRLMSATPALCSPKRHYMSPDDHSTSSLNKLARRPPRSRSLKFDTPVKNKEAMNEDNTGALLIDDDVFDILPGKLIQSIREKERIAMEERDPAITQAKKRKKMIANLPKLFDMIRLLLRQRNCITKVELVSKIISSHSDIVDRSEVEEQLSLLQELTPEWISEKQVSSGDFLIFINKLLSPETIRACLEEAT 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00029 637 CDD Cdt1_c 515 634 IPR032054 -
Vium1650g00029 637 Pfam DNA replication factor CDT1 like 107 208 IPR014939 -
Vium1650g00029 637 Pfam DNA replication factor Cdt1 C-terminal domain 520 611 IPR032054 -
Vium1650g00029 637 MobiDBLite consensus disorder prediction 1 52 - -
Vium1650g00029 637 MobiDBLite consensus disorder prediction 323 344 - -
Vium1650g00029 637 Gene3D - 510 637 IPR038090 -
Vium1650g00029 637 FunFam CDT1-like protein a chloroplastic 509 637 - -
Vium1650g00029 637 MobiDBLite consensus disorder prediction 462 487 - -
Vium1650g00029 637 PANTHER DNA REPLICATION FACTOR CDT1 11 636 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vium1650g00029 637 MobiDBLite consensus disorder prediction 68 98 - -
Vium1650g00029 637 MobiDBLite consensus disorder prediction 64 103 - -
Vium1650g00029 637 MobiDBLite consensus disorder prediction 16 43 - -
Vium1650g00029 637 SUPERFAMILY "Winged helix" DNA-binding domain 104 241 IPR036390 -
Vium1650g00029 637 SMART CDT1_2 107 239 IPR014939 -
Vium1650g00029 637 CDD Cdt1_m 106 260 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00029 Vium-Chr1650 320866 324151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00029 436 635 Core DNA Replication Machinery Family AT2G31270 50.467 3.13e-47 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00029 K10727 - gmx:100778818 774.237