Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00028 ATGGGTAGCAACTTGCACCGACTGCTCAGAAGCTTCTGTTTGGGTACTGATTGGAAGTATGCCATCTTTTGGAAGCTCAAACACCGGGCTCGGATGATCCTGACATGGGAGGATGCTTACTATGACAATCCCAATATTTGTGACTCTTCTGGAAATAAGAGCTGCCAGAATACATGGGAGCAGATTGACAGTGCAGATTTTTCGCATGATCCTCTAGAGTTAGCTGTGGCAAAGATGTCATATCATGTATATTCGTTAGGGGAAGGAATTGTTGGACAGGTAGCTGTTACAGGAAAACATCGGTGGATATATGAAGACAATCAAGTTACAAGCTCTGGCCCATCTTTAGAGATTGCTGATGGATGGCAATCTCAATTTTCTGCTGGAATTAGGACCATTGTTGTTATAGCCGTAGTCCCCATTGGAGTTGTTCAACTTGGTTCCATGAATAAAGTTGCTGAAGATATGGGGGTTATAACCTGTATCCGAAGTCTCTTTTTGTCTAATCAAGATTACACACTCCACCATGATCCTAATCAAGTACAAAAGAGTCTGAAGAATTCTTCGTCTGTGTTGGATTCAAAAGCTTCAGAAAGTGTGCCTGCTCACTTGCACAATACAGAGAAAACCATGAAGCATGAATCACTGGATAATTTAATGCCCTTTCAAGGTCCTGGGAACAATTATTCACCTCATGCTGTGAATCAGAAGATGACTGTTGATGTGGCCAAGCATGAAGGGCCAGAATTATACAGTGATGGAAATTTCATTTTGCTTCAGTCAATGTCTAATATGATGAATGTGGATCAGCATAAATTTTTAGGGATGAGACCTATAAATGAGAGAAATTTTGAATGGAACAGTAGTGGCTGTGATGATACAAGTGTGGAATCAGGAAAAAAATTGTCATCTTTTTTACATAATTTGGTTACGGGTAATAATGGTGTCAATGATTTAGTATGTCCATCCAAAATTGTTGGATTTGATTCTGTATCCTTCTCCTCAGAATTTCTTGATACAGCTGTCTGTGAGAGTGACAAGTTTCATTATGTAGATATCAACCAAAGAGGAGTGTTGAACTGGACCAGACCTTCAGATGCATACTCCCGCCAAGATACTGGGAAGTCAAAGTTTCAGACTGAACCTTGTTCCAAGGATACCGCATACACTTTGAAGTTTCCTGCTGGCTATGAGTTACATGAAGCACTTGGGCCAAGTTTTCTAAGAGGGAGCAAATATTTTGATTGGGCAGTAAAGGCATATCAAGATGTTAAAGCCGCTGAGATGTCAGATGAGCTAAGCTGTAGCCAATTGACTTCTGAATCTCAACCAGAGCATCTCTTAGAGGCTATGGTGGCTAACATCTGCCATAGTAATAATAATGTCAATAGCGAGTTGTCATTTTCTACAACAATGCAGGCTGCAATAGCCTCAGGAAGTAATCCTGAGGGTTCAATCCACACTGTCCACACCATTAATTCTGAAAGCTGTTCAATAGATCAGCCTCACATTGGTATAGAGGAAAAACACTATAATTTGGGTTCATCTGGGATATGTGGTATAATGTCTCCAAAGGGTTTTTCTTCTACATGCCCTAGTTCATGTAGTGAACAATTTGAGAGGTCTTCTGAACCAACTAAGAACAGCAAGAAGAGGGCTAGGCCTGGTGAAAGTTGTAGGCCTAGACCAAGGGACAGACAACTTATCCAAGATCGTATTAAGGAGTTGAGGGAACTGGTACCAAATGGAGCAAAGTGCAGTATTGATTCGCTTCTGGAGTGCACCATAAAACACATGCTCTTTCTCAAGAATGTAACCAAGCATGCTGACAAGCTAAATAAATTTACGGACACAAAGACTAAGTTGCAGCACATGGAAAAAGATATTAACGGATCATCAAGTCATCAACAAGGTTCAAGTTGGGCAATGGAAGTCGGAGGCCATCTGAAAGTTCGTTCAATATTAGTGGAGAATCTTAATAAGAATGGCCAGATGCTTGTTGAGATGTTGTGTGAGGAGTGTAGCCATTTTCTTGAGATAGCAGAAGCCATCAGAAGCATGGGTCTGACAATATTGAATGGGGCAACAGAAGCTCATGGCGAGAAGACATGTATATGTTTTGTGGTTGAGGCAGGGTCAGAAGGCCAAAACAACAGAAATTTACACAGATTGGATATCTTGTGGCCGCTTGTTCAATTACTGCAATCCAAGAGCACTATGTATTCATAA 2229 0.4092 MGSNLHRLLRSFCLGTDWKYAIFWKLKHRARMILTWEDAYYDNPNICDSSGNKSCQNTWEQIDSADFSHDPLELAVAKMSYHVYSLGEGIVGQVAVTGKHRWIYEDNQVTSSGPSLEIADGWQSQFSAGIRTIVVIAVVPIGVVQLGSMNKVAEDMGVITCIRSLFLSNQDYTLHHDPNQVQKSLKNSSSVLDSKASESVPAHLHNTEKTMKHESLDNLMPFQGPGNNYSPHAVNQKMTVDVAKHEGPELYSDGNFILLQSMSNMMNVDQHKFLGMRPINERNFEWNSSGCDDTSVESGKKLSSFLHNLVTGNNGVNDLVCPSKIVGFDSVSFSSEFLDTAVCESDKFHYVDINQRGVLNWTRPSDAYSRQDTGKSKFQTEPCSKDTAYTLKFPAGYELHEALGPSFLRGSKYFDWAVKAYQDVKAAEMSDELSCSQLTSESQPEHLLEAMVANICHSNNNVNSELSFSTTMQAAIASGSNPEGSIHTVHTINSESCSIDQPHIGIEEKHYNLGSSGICGIMSPKGFSSTCPSSCSEQFERSSEPTKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLKNVTKHADKLNKFTDTKTKLQHMEKDINGSSSHQQGSSWAMEVGGHLKVRSILVENLNKNGQMLVEMLCEECSHFLEIAEAIRSMGLTILNGATEAHGEKTCICFVVEAGSEGQNNRNLHRLDILWPLVQLLQSKSTMYS 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00028 742 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Vium1650g00028 742 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 553 602 IPR011598 GO:0046983
Vium1650g00028 742 MobiDBLite consensus disorder prediction 178 199 - -
Vium1650g00028 742 MobiDBLite consensus disorder prediction 538 567 - -
Vium1650g00028 742 MobiDBLite consensus disorder prediction 543 567 - -
Vium1650g00028 742 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 740 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00028 Vium-Chr1650 297996 306854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00028 1 738 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 40.774 1.03e-155 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00028 - - gmx:100777740 1212.21