Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00027 ATGGGTAGCAACTTGCACCGACTGCTCAGAAGCTTCTGTTTGGGTACTGATTGGAAGTATGCCATCTTTTGGAAGCTCAAACACCGGGCTCGGATGATCCTGACATGGGAGGATGCTTACTATGACAATCCCAATATTTGTGACTCTTCTGGAAATAAGAGCTGCCAGAATACATGGGAGCAGATTGACAGTGCAGATTTTTCGCATGATCCTCTAGAGTTAGCTGTGGCAAAGATGTCATATCATGTATATTCGTTAGGGGAAGGAATTGTTGGACAGGTAGCTGTTACAGGAAAACATCGGTGGATATATGAAGACAATCAAGTTACAAGCTCTGGCCCATCTTTAGAGACCATTGTTGTTATAGCCGTAGTCCCCATTGGAGTTGTTCAACTTGGTTCCATGAATAAAGTTGCTGAAGATATGGGGGTTATAACCTGTATCCGAAGTCTCTTTTTGTCTAATCAAGATTACACACTCCACCATGATCCTAATCAAGTACAAAAGAGTCTGAAGAATTCTTCGTCTGTGTTGGATTCAAAAGCTTCAGAAAGTGTGCCTGCTCACTTGCACAATACAGAGAAAACCATGAAGCATGAATCACTGGATAATTTAATGCCCTTTCAAGGTCCTGGGAACAATTATTCACCTCATGCTGTGAATCAGAAGATGACTGTTGATGTGGCCAAGCATGAAGGGCCAGAATTATACAGTGATGGAAATTTCATTTTGCTTCAGTCAATGTCTAATATGATGAATGTGGATCAGCATAAATTTTTAGGGATGAGACCTATAAATGAGAGAAATTTTGAATGGAACAGTAGTGGCTGTGATGATACAAGTGTGGAATCAGGAAAAAAATTGTCATCTTTTTTACATAATTTGGTTACGGGTAATAATGGTGTCAATGATTTAGTATGTCCATCCAAAATTGTTGGATTTGATTCTGTATCCTTCTCCTCAGAATTTCTTGATACAGCTGTCTGTGAGAGTGACAAGTTTCATTATGTAGATATCAACCAAAGAGGAGTGTTGAACTGGACCAGACCTTCAGATGCATACTCCCGCCAAGATACTGGGAAGTCAAAGTTTCAGACTGAACCTTGTTCCAAGGATACCGCATACACTTTGAAGTTTCCTGCTGGCTATGAGTTACATGAAGCACTTGGGCCAAGTTTTCTAAGAGGGAGCAAATATTTTGATTGGGCAGTAAAGGCATATCAAGATGTTAAAGCCGCTGAGATGTCAGATGAGCTAAGCTGTAGCCAATTGACTTCTGAATCTCAACCAGAGCATCTCTTAGAGGCTATGGTGGCTAACATCTGCCATAGTAATAATAATGTCAATAGCGAGTTGTCATTTTCTACAACAATGCAGGCTGCAATAGCCTCAGGAAGTAATCCTGAGGGTTCAATCCACACTGTCCACACCATTAATTCTGAAAGCTGTTCAATAGATCAGCCTCACATTGGTATAGAGGAAAAACACTATAATTTGGGTTCATCTGGGATATGTGGTATAATGTCTCCAAAGGGTTTTTCTTCTACATGCCCTAGTTCATGTAGTGAACAATTTGAGAGGTCTTCTGAACCAACTAAGAACAGCAAGAAGAGGGCTAGGCCTGGTGAAAGTTGTAGGCCTAGACCAAGGGACAGACAACTTATCCAAGATCGTATTAAGGAGTTGAGGGAACTGGTACCAAATGGAGCAAAGTGCAGTATTGATTCGCTTCTGGAGTGCACCATAAAACACATGCTCTTTCTCAAGAATGTAACCAAGCATGCTGACAAGCTAAATAAATTTACGGACACAAAGACTAAGTTGCAGCACATGGAAAAAGATATTAACGGATCATCAAGTCATCAACAAGGTTCAAGTTGGGCAATGGAAGTCGGAGGCCATCTGAAAGTTCGTTCAATATTAGTGGAGAATCTTAATAAGAATGGCCAGATGCTTGTTGAGATGTTGTGTGAGGAGTGTAGCCATTTTCTTGAGATAGCAGAAGCCATCAGAAGCATGGGTCTGACAATATTGAATGGGGCAACAGAAGCTCATGGCGAGAAGACATGTATATGTTTTGTGGTTGAGGCAGGGTCAGAAGGCCAAAACAACAGAAATTTACACAGATTGGATATCTTGTGGCCGCTTGTTCAATTACTGCAATCCAAGAGCACTATGTATTCATAA 2187 0.4092 MGSNLHRLLRSFCLGTDWKYAIFWKLKHRARMILTWEDAYYDNPNICDSSGNKSCQNTWEQIDSADFSHDPLELAVAKMSYHVYSLGEGIVGQVAVTGKHRWIYEDNQVTSSGPSLETIVVIAVVPIGVVQLGSMNKVAEDMGVITCIRSLFLSNQDYTLHHDPNQVQKSLKNSSSVLDSKASESVPAHLHNTEKTMKHESLDNLMPFQGPGNNYSPHAVNQKMTVDVAKHEGPELYSDGNFILLQSMSNMMNVDQHKFLGMRPINERNFEWNSSGCDDTSVESGKKLSSFLHNLVTGNNGVNDLVCPSKIVGFDSVSFSSEFLDTAVCESDKFHYVDINQRGVLNWTRPSDAYSRQDTGKSKFQTEPCSKDTAYTLKFPAGYELHEALGPSFLRGSKYFDWAVKAYQDVKAAEMSDELSCSQLTSESQPEHLLEAMVANICHSNNNVNSELSFSTTMQAAIASGSNPEGSIHTVHTINSESCSIDQPHIGIEEKHYNLGSSGICGIMSPKGFSSTCPSSCSEQFERSSEPTKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLKNVTKHADKLNKFTDTKTKLQHMEKDINGSSSHQQGSSWAMEVGGHLKVRSILVENLNKNGQMLVEMLCEECSHFLEIAEAIRSMGLTILNGATEAHGEKTCICFVVEAGSEGQNNRNLHRLDILWPLVQLLQSKSTMYS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00027 728 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 726 IPR043561 GO:0003700|GO:0006355
Vium1650g00027 728 MobiDBLite consensus disorder prediction 165 185 - -
Vium1650g00027 728 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 152 IPR025610 -
Vium1650g00027 728 MobiDBLite consensus disorder prediction 529 553 - -
Vium1650g00027 728 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 539 588 IPR011598 GO:0046983
Vium1650g00027 728 MobiDBLite consensus disorder prediction 524 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00027 Vium-Chr1650 297995 306861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00027 1 724 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 39.897 2.50e-147 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00027 - - gmx:100777740 1175.61