Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00019 ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTGAAGAAAGGGCCATGGAGTCCTGAGGATGATGAAAAGCTAAGAGATTTCATAGAGAAACATGGTACAGGTGGAAACTGGATTTCCCTCCCACATAAAGCTGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTGAGATGGCTTAATTATCTGAGGCCAAACCTTAAGCATGGGGAGTTTTCTGAAGATGAAGATAGAATAATCTGCACTCTCTTTGGTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATAATGAACCCTTCAGCACTGAAGAAGCCTCACCAAGTTACCCTTTCATCCATGCTTCAAAACTCAACACCCTCTTCATCCTCCTCCTCATCTTCATTATCACTAAAAAGCAATCACAGCTCAAACCATCAACCCCATGGGCCTTTCACAAGCCCTGACACCATTTCATATGAAAGTCTTCTTAGTGGAAACTCTTGTTCTACTTTTGAGAGCCTTTACCAAGTTAATTGTGGGTTTATGCTTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAATAATCAGATGAATCATGTGAAAGGAGCAGAAGTTGGAGATGTTGGTGTTGGAGGTTTTGGTGACCAAATTGGTGGTCTCAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGTCCTCCAATGGTGGTAGGACTAGTGGATGGACAGGTGAAGAAAGTAGATTATGGGGAGAAAGTCCATTAGAGTATGGTTTAGAAGAAATTAAAGAGCTAATGAGCACAAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTGATGTACTACTGA 936 0.4231 MGRAPCCDKANVKKGPWSPEDDEKLRDFIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFGSIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGIMNPSALKKPHQVTLSSMLQNSTPSSSSSSSSLSLKSNHSSNHQPHGPFTSPDTISYESLLSGNSCSTFESLYQVNCGFMLETSCSSSSDGSCNNNNQMNHVKGAEVGDVGVGGFGDQIGGLSYLSSGVEDTQKLVSSNGGRTSGWTGEESRLWGESPLEYGLEEIKELMSTSSCNNFMFDDSKTGEMVMYY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00019 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium1650g00019 311 MobiDBLite consensus disorder prediction 131 170 - -
Vium1650g00019 311 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium1650g00019 311 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium1650g00019 311 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vium1650g00019 311 FunFam Transcription factor RAX3 7 68 - -
Vium1650g00019 311 Gene3D - 7 68 - -
Vium1650g00019 311 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium1650g00019 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium1650g00019 311 CDD SANT 16 62 IPR001005 -
Vium1650g00019 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium1650g00019 311 PANTHER OS09G0431300 PROTEIN 1 282 - -
Vium1650g00019 311 SMART sant 13 64 IPR001005 -
Vium1650g00019 311 SMART sant 67 115 IPR001005 -
Vium1650g00019 311 CDD SANT 70 113 IPR001005 -
Vium1650g00019 311 Gene3D - 69 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00019 Vium-Chr1650 252031 254144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00019 1 119 MYB Transcription Factor Family AT5G57620 84.034 1.57e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1650g00019 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00019 K09422 - gmx:100794828 440.269