Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00013 ATGTCACAGAATTCTGAGGAGATAAAGACGGTTGAACAGTGGAGATGGTCTGAAATGCAAGGCCTTGAGCTTATGTCCTCTTCTGCTCCTGTTTCTCATTCACATGAATCCAACTCAACATTGGAAGAAAAAAAAGAAAGGGTAATGGAGGAGGCTTCAGTAGCCAAGAAAGATGCTTCTGCTTCTAATGGTACTTGTAGTGGTGGTGGTGGTGGTGGGGATAAGAAGGGTGAGAGCATTTCTTCTGTTCGGTTTGGTGAGCTTTTCAGATTTGCGGATGGGTTGGATTACATTTTAATGGCAATTGGAACGGTTGGAGCATTTGTACATGGTTCCTCCTTGCCACTCTTTCTTCGTTTCTTCGCTGATCTCGTGAATTCCTTTGGTGCCAATGCGAATAACTTGGACAAGATGACTCAGGAAGTGGTGAAGTATGCGTTTTACTTCCTGGTGGTGGGGGCTGCCATATGGGCATCCTCCTGGGCAGAGATTTCGTGCTGGATGTGGACAGGTGAGAGGCAATCAACGAGAATGAGGATCAGGTATCTGGAGGCAGCGTTGGACCAGGACATTCAATTCTTTGACACCGAGGTTCGAACATCCGATGTTGTGTTTGCCATTACCAGTGATGCTGTTATGGTACAAGATGCCATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCGGTCTGGCAACTGGCACTGGTAACCCTCGCTGTGGTCCCCATAATTGCAGTAATCGGAGGCATTCACACTACCACCTTGGCCAAGTTATCTAGTAAAAGCCAGGATGCTCTATCTCAAGCTGGTAACATTGTGGAACAGACAGTTGTTCAAATTCGAGTGGTTTTGGCTTTTGTTGGGGAGACTAGAGCACTGCAGGCCTATTCCTCTGCGTTGAGGACTGCACAGAAGATTGGCTACAGGACTGGATTTGCAAAAGGAATGGGATTGGGGGCCACATACTTTGTTGTTTTCTGTTGCTATGCTCTTTTGCTTTGGTATGGTGGCTATTTGGTTAGACACCACTACACCAACGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATTGGTGGACTGGCTTTAGGACAGTCTGCACCTAGCATGGCTGCATTTACCAAGGCCAGAGTTGCTGCTGCTAAGATTTTTCGTGTGATAGATCACAAGCCGGGTATAGACAGAAAGAGTGAATCGGGTTTGGAGTTAGAGAGTGTTACAGGACTGGTAGAGTTGAGAAATGTGGACTTTTCATACCCCTCGAGGCCAGAGGTTATGATCCTCAACCATTTCTCATTGAGTGTACCTGCTGGCAAGACCATTGCTCTTGTAGGTAGCAGTGGATCAGGAAAAAGCACAGTTGTGTCCCTCATTGAGAGATTCTATGATCCTTTTTCAGGACAAGTAATGCTAGATGGGCATGACGTTAAGACATTGAAGCTTAGATGGTTGAGACAGCAAATAGGACTGGTGAGCCAAGAACCTGCTTTGTTTGCTACCACAATTAGAGAAAACATACTCTTGGGTAGGCCTGATGCAGATCAGGGTGAGATTGAAGAAGCTGCCAGAGTGGCCAATGCTCACTCCTTTATCATCAAACTTCCCGAAGGCTATGAAACTCAGGTAGGGGAGAGAGGCCTGCAACTTTCAGGAGGACAAAAGCAGAGAATAGCAATTGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAGGCCACAAGTGCATTGGACTCAGAGTCAGAAAAGCTGGTTCAGGAGGCCCTTGATCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCTCATCGCCTCTCCACAATTCGGAAAGCTGACCTTGTGGCTGTGCTTCAGCAAGGAAGTGTCACTGAAATTGGAACTCATGATGAGCTCTTTGCTAAAGGTGAAAATGGAGTCTATGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTTCTATGACTAATGCCAGAAAGAGTAGTGCTAGGCCTTCAAGCGCCAGAAACTCTGTAAGCTCACCCATTATAGCACGAAATTCTTCTTATGGGCGATCACCATACTCACGCAGACTATCTGACTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAATCACAGGCCTGAAAAGCTTGCCTTCAAAGATCAAGCTAGTTCCTTCTGGCGACTTGCAAAAATGAACTCTCCTGAATGGCTATATGCCTTAATTGGTTCTGTAGGATCTGTCGTTTGTGGATCCCTCAGTGCATTTTTTGCTTATGTTCTCAGTGCTGTCCTCAGCGTTTATTACAATCCAAACCACAGACACATGATCCAAGAAATTGAAAAGTACTGTTACTTGTTGATTGGGCTATCATCGGCTGCTCTCCTCTTCAACGCATTGCAGCACTCCTTCTGGGATATTGTTGGTGAAAATCTTACAAAACGAGTGAGGGAGAAAATGCTTACTGCAGTGCTTAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAAAGTGCTCGAGTTGCAGCAAGGCTTTCTCTTGATGCCAACAATGTTAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTCATGCTAGTTGCCTGTACTGCAGGGTTTGTATTGCAATGGCGCCTTGCCCTTGTTCTTGTGGCCGTATTCCCGGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGCGACCTGGAAGCTGCTCATGCCAAGGCCACTCAACTAGCAGGAGAGGCGATAGCCAATGTAAGGACAGTTGCTGCTTTTAATTCAGAAAGGAAAATTGTTGGCCTTTTCACATCAAACCTTGAAACTCCACTGCGGCGCTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGAATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCACGGTATATCTGATTTTTCTAAAACAATCCGAGTTTTTATGGTTCTCATGGTCTCTGCTAATGGTGCTGCTGAAACCTTAACCCTGGCCCCTGACTTCATAAAGGGTGGTCGTGCCATGAGATCGGTCTTTGAACTTCTTGACCGAAGAACTGAGATTGAGCCTGATGACCCAGATGCTACCCCTGTTCCTGATCACCTTCGTGGTGAAGTAGAACTCAAGCATGTTGACTTTTCTTATCCAACTAGACCAGATATGTCAGTTTTTCGTGACCTCAGCCTTCGTGCCAGGGCAGGTAAAACTCTTGCCCTTGTAGGGCCTAGTGGCTGTGGCAAGAGTTCAGTCATTGCACTTATACAAAGGTTTTATGATCCAACATCCGGGAGGGTCATGATTGATGGAAAGGACATAAGGAAATACAATCTCAAGTCTCTTAGAAGGCACATTGCTGTGGTGCCTCAGGAGCCATGCCTATTTGCTACTACTATTTATGAGAACATTGCTTATGGACATGACTCAGCCACTGAAGCTGAGATCATAGAGGCTGCAACTCTTGCCAATGCTCACAAGTTCATATCTTCTCTGCCTGATGGATTCAAGACATTTGTTGGTGAGAGGGGAGTTCAACTATCAGGGGGACAAAAGCAAAGAATAGCAATTGCTAGAGCTTTTATGAGGAAGGCAGAACTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGATCTGTTCAGGAGGCCTTGGACCGTGCCTGTGCTGGAAAAACTACCATCATTGTTGCACACAGGTTATCAACTATTAGGAATGCCAATCTGATTGCAGTGATGGATGATGGGAAGGTAGCAGAGCAAGGCTCCCATTCGCAGTTACTAAAGAATTACCCTGATGGGATCTATGCACGCATGATTCAGTTACAAAGGTTAACAAATAACCAAGTTATTGGAGTGGCCGCAGGATCAAGTTCTTCAGCAAGAACAAAAGATGATGAAAGAGAAGGCTAA 4038 0.4542 MSQNSEEIKTVEQWRWSEMQGLELMSSSAPVSHSHESNSTLEEKKERVMEEASVAKKDASASNGTCSGGGGGGDKKGESISSVRFGELFRFADGLDYILMAIGTVGAFVHGSSLPLFLRFFADLVNSFGANANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLEAALDQDIQFFDTEVRTSDVVFAITSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPIIAVIGGIHTTTLAKLSSKSQDALSQAGNIVEQTVVQIRVVLAFVGETRALQAYSSALRTAQKIGYRTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMIGGLALGQSAPSMAAFTKARVAAAKIFRVIDHKPGIDRKSESGLELESVTGLVELRNVDFSYPSRPEVMILNHFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPFSGQVMLDGHDVKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQGEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDELFAKGENGVYAKLIRMQEMAHETSMTNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNHRPEKLAFKDQASSFWRLAKMNSPEWLYALIGSVGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIQEIEKYCYLLIGLSSAALLFNALQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARVAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSERKIVGLFTSNLETPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDPDATPVPDHLRGEVELKHVDFSYPTRPDMSVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGFKTFVGERGVQLSGGQKQRIAIARAFMRKAELMLLDEATSALDAESERSVQEALDRACAGKTTIIVAHRLSTIRNANLIAVMDDGKVAEQGSHSQLLKNYPDGIYARMIQLQRLTNNQVIGVAAGSSSSARTKDDEREG 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00013 1345 Gene3D - 414 664 IPR027417 -
Vium1650g00013 1345 Gene3D - 1068 1319 IPR027417 -
Vium1650g00013 1345 SMART AAA_5 451 637 IPR003593 GO:0016887
Vium1650g00013 1345 SMART AAA_5 1106 1299 IPR003593 GO:0016887
Vium1650g00013 1345 FunFam ABC transporter B family member 1 414 664 - -
Vium1650g00013 1345 SUPERFAMILY ABC transporter transmembrane region 743 1066 IPR036640 GO:0005524|GO:0016020
Vium1650g00013 1345 CDD ABC_MTABC3_MDL1_MDL2 1079 1318 - -
Vium1650g00013 1345 Gene3D ABC transporter type 1, transmembrane domain 1045 1322 IPR036640 GO:0005524|GO:0016020
Vium1650g00013 1345 CDD ABC_MTABC3_MDL1_MDL2 424 663 - -
Vium1650g00013 1345 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 101 389 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1650g00013 1345 FunFam ABC transporter B family member 1 87 422 - -
Vium1650g00013 1345 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 756 1043 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1650g00013 1345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 660 IPR003439 GO:0005524
Vium1650g00013 1345 PANTHER ABC TRANSPORTER B FAMILY 72 804 IPR039421 -
Vium1650g00013 1345 MobiDBLite consensus disorder prediction 667 688 - -
Vium1650g00013 1345 FunFam ABC transporter B family member 1 735 1044 - -
Vium1650g00013 1345 Pfam ABC transporter 442 591 IPR003439 GO:0005524
Vium1650g00013 1345 Gene3D ABC transporter type 1, transmembrane domain 87 678 IPR036640 GO:0005524|GO:0016020
Vium1650g00013 1345 Pfam ABC transporter 1098 1246 IPR003439 GO:0005524
Vium1650g00013 1345 MobiDBLite consensus disorder prediction 25 76 - -
Vium1650g00013 1345 CDD ABC_6TM_Pgp_ABCB1_D2_like 745 1061 - -
Vium1650g00013 1345 CDD ABC_6TM_Pgp_ABCB1_D1_like 100 397 - -
Vium1650g00013 1345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1079 1315 IPR003439 GO:0005524
Vium1650g00013 1345 ProSitePatterns ABC transporters family signature. 563 577 IPR017871 GO:0005524|GO:0016887
Vium1650g00013 1345 SUPERFAMILY ABC transporter transmembrane region 88 408 IPR036640 GO:0005524|GO:0016020
Vium1650g00013 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1070 1318 IPR027417 -
Vium1650g00013 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 663 IPR027417 -
Vium1650g00013 1345 FunFam ABC transporter B family member 19 1045 1067 - -
Vium1650g00013 1345 FunFam ABC transporter B family member 1 1069 1319 - -
Vium1650g00013 1345 ProSitePatterns ABC transporters family signature. 1218 1232 IPR017871 GO:0005524|GO:0016887
Vium1650g00013 1345 Pfam ABC transporter transmembrane region 757 1026 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1650g00013 1345 Pfam ABC transporter transmembrane region 101 373 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1650g00013 1345 Coils Coil 38 58 - -
Vium1650g00013 1345 MobiDBLite consensus disorder prediction 37 54 - -
Vium1650g00013 1345 Gene3D ABC transporter type 1, transmembrane domain 737 1044 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00013 Vium-Chr1650 165218 172025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00013 75 1342 Calmodulin-binding Proteins AT2G36910 88.022 0.0 2295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00013 K05658 - gmx:100806508 2373.97