Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00010 ATGGGAGGAAAATGTCCACACCGGAACGTGAAGAAAAGAAGATATTCTCACAAGACAGCACGCCGAACCAAATTTGAGTTGAAAGGCGACGATATGGTTTACGCGCAGCTAAACAAACCCGATGAAGAGATAACCCCTTTACCCGTAGACGAAGATTTGCCTGGGATGGGACAGTACTATTGCCCTCACTGCGATCGGTACTTTTCCAATATAACTGTGAGGGATGAACACTTTAAAACCAAACGACACAAGAAACGTGTAAAAATAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGAATTAGCTGCAGGGATGGGTATGCCAGACAATGGACCAAAGCTGATGTCTATGTAA 360 0.4472 MGGKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDEEITPLPVDEDLPGMGQYYCPHCDRYFSNITVRDEHFKTKRHKKRVKIMMGPAPHTQLDAELAAGMGMPDNGPKLMSM 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00010 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Vium1650g00010 119 SUPERFAMILY beta-beta-alpha zinc fingers 46 110 IPR036236 -
Vium1650g00010 119 Gene3D Classic Zinc Finger 46 109 - -
Vium1650g00010 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
Vium1650g00010 119 ProSiteProfiles Zinc finger matrin-type profile. 59 89 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vium1650g00010 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Vium1650g00010 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00010 3 118 C2H2 Transcription Factor Family AT2G36930 76.724 7.73e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00010 K14821 - gmx:100527632 240.736