Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00006 ATGCTTAGGTTTTTTGTTGGGAGGATACAAAAGGGTCTTTCACTGTTTGTGGCTAGAAGGCCTGCATTCAGCTACTTGAGTGAAGATGGTGCCCCTAATGAGGCACCGGATGATGTTATGGAAGGTTATTTTGCTGTTGTTGCAATGAAGGGTAAGGAAAGAAAAAGGTTCATTGTTGGGTTAGATTTCTTGTCTGATCCTGCATTCTTGGGACTGTTGGATCAAGCTCAAGAAGAGTATGGTTTCCGACACCAGGGAGCTCTTGCACTCCCTTGTCGACCTCAGGAGTTGCAGAAGATTCTAGATGCTCCAAAAGCATAA 321 0.4455 MLRFFVGRIQKGLSLFVARRPAFSYLSEDGAPNEAPDDVMEGYFAVVAMKGKERKRFIVGLDFLSDPAFLGLLDQAQEEYGFRHQGALALPCRPQELQKILDAPKA 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00006 106 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 100 IPR003676 GO:0009733
Vium1650g00006 106 Pfam Auxin responsive protein 33 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00006 Vium-Chr1650 64339 65132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00006 34 101 Calmodulin-binding Proteins AT3G43120 47.059 2.83e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00006 - K14488 gmx:100818734 168.703