Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1650g00005 ATGATGAGGTCTTTCGTTGGAAAGATTCAAAAGGGTGTCTCGCAGATTGTGCCTGGAAAACCTGCACTGAACTACATCAATGAAAACCAATTGGAAAACACAGGGGCTGTTCCAGAAGATGTTAGCAAAGGGTATTTTGCAGTTATTGCAATCAAAGATGGAGAAATCAAAAGGTTTGTGGTTGAGTTGGATTACTTGACTAATCCTGCATTCTTGGGACTGTTAGATCAAGCTGGAGAAGAGTATGGTTTCAAGCAACAGGGAACTCTTGCAGTCCCTTGTAAGCCTAAGGAGTTACAGAAGATTCTAGATGGTTGGAGAGTGAGACCAGACACCATCAAAGCTGCAGGAAGGGATTTATATGTACCTAAGTTCCTATGA 381 0.4199 MMRSFVGKIQKGVSQIVPGKPALNYINENQLENTGAVPEDVSKGYFAVIAIKDGEIKRFVVELDYLTNPAFLGLLDQAGEEYGFKQQGTLAVPCKPKELQKILDGWRVRPDTIKAAGRDLYVPKFL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1650g00005 126 Pfam Auxin responsive protein 35 103 IPR003676 GO:0009733
Vium1650g00005 126 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 32 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1650g00005 Vium-Chr1650 47149 47838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1650g00005 38 110 Calmodulin-binding Proteins AT3G43120 36.986 4.59e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1650g00005 - K14488 gmx:106795483 210.69