LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium164g00045	ATGAAGCAACAATCATGGAGATCAACTGAGAGATCAGTTTTACCTTCTTTTACAGGTTCCAGTATGGGTAAGTCACCTGGAAAATGGATCAAAACCGTACTGTTTGGGAAAAAGTCATCCAAATCCAATATTTCAAAAGGCAGAGAGAAGCTTGTTAATAAAAAAGAAGGAGTAATAGTTACCTCCAAGGTGCCGGAAACGGGTTTGACTTTAGAACCAACCTCTGATGCTATTCCCAATCGCGATGAAGTCCAGGAAGTGGATAACAAAGAAGCGGAAAATGTTTTACCTGACAATCAAGAAATAGACTTAGTAGGATCTACTAATGAAGAGGATGCACTGGATCCCGAGAAAATGAGGCTGGAGGAAGCAGCAACAAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGAAGAGCATTTAGGGCCTTGAAAGGCATAATAAGGCTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCACTATGTATGGTATTGTCAAGTTTCAAGCACTTGTTCGTGGAGGAAGAGTTAGGCAGTCTAATGTTGGTTCTGAAATCCATGAGAAGTACAATATATTGAACCCTCTGGATGGGAAATTTGTCAAGCCAATTGCTATATCCACGAAAATTACAAAGCTGTCAGCAAATGCATTCATTCTTAAGCTTTTTACTTCGTCAACTACAATAATGGCATTGCGTTTGCAATATGTTCCGGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCAATTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCAGGATAGCAAGGCTCAAAGAAAGCATGGCAATATTTCAGTTGGAGATACTCAAACGAGTAAGTCAAAACGTACCAACAGGAAGCTTCCTACTTCGAATTTTGACTCAGTCCCAGTGCTAGCAAATCCTGAATTTGAGAAACCCAAAAGAAACTCAAGGAAAATTCCAAGTCAACCCTCAGATCCCGTGCAGGAAAATCCACAAAATGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAATCCTGTTGCTGAGAATGCTGTTCCTGCAGAAGTTGAAACTGAGATGCCAAAGGAACATTTGGAAAAGGCCACAGTTACCTCATCCCTTGCTGTTTCAGAACAAGAGGTCGTTAGTTTTAATGACAAGGTCAAGAAGGAAGCAGCCTTAACTGTTTCCAGCGTGCAAGATATAGAAACTACTCCAAGACTTTCAGCTAGTAACGAAATGCTTGACACACCAACTAGTAATCAAGTGACTGTGGAATCGAAGCCCTTGACTGAAATTACAACTAAAGATAAAAATATTTCCGATGAAGTAAAATATGAGCCCATAGATTTGCCAGAGCTTATTTGTGGAGATGAAAATTCTCTCTTGACAAATGGAGATTTGAGTCACAAGGAAGATCCAATAGGCAGTGAAAACCAGAAACCGAACAGAAAAGGCTCTAATGTAGCAAAACAGGAACGTGCAGATAATGGAATACAGAATAGTCCAACATTGCCAAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTAAGGGCACAAGGATCTCCAAGATTTGGACAAGATGGAAGTGAAAGAAACAACCAGACCCGGCGCCATTCTTTGCCATCCTCAACTAACAGCAAAATTAGTTCGCATTCACCCAGGACACACAGACCAGTTCACTCAGGTGGCAAAGGGGGCAACAGAAGCGACAGAACTGTATCATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAATGGAGGAGGTAA	1821	0.4152	MKQQSWRSTERSVLPSFTGSSMGKSPGKWIKTVLFGKKSSKSNISKGREKLVNKKEGVIVTSKVPETGLTLEPTSDAIPNRDEVQEVDNKEAENVLPDNQEIDLVGSTNEEDALDPEKMRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCTMYGIVKFQALVRGGRVRQSNVGSEIHEKYNILNPLDGKFVKPIAISTKITKLSANAFILKLFTSSTTIMALRLQYVPGDPNSVLSWLERWSASQFWKPVPQPKKIQDSKAQRKHGNISVGDTQTSKSKRTNRKLPTSNFDSVPVLANPEFEKPKRNSRKIPSQPSDPVQENPQNELEKVKRNLRKVHNPVAENAVPAEVETEMPKEHLEKATVTSSLAVSEQEVVSFNDKVKKEAALTVSSVQDIETTPRLSASNEMLDTPTSNQVTVESKPLTEITTKDKNISDEVKYEPIDLPELICGDENSLLTNGDLSHKEDPIGSENQKPNRKGSNVAKQERADNGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNNQTRRHSLPSSTNSKISSHSPRTHRPVHSGGKGGNRSDRTVSSSSRDGNGKVIQAEWRR	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	582	597	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	270	343	-	-
	Vium164g00045	606	Gene3D	-	118	168	-	-
	Vium164g00045	606	PANTHER	IQ-DOMAIN 5-RELATED	22	561	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	1	27	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	417	442	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	540	567	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	417	606	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	281	312	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	443	461	-	-
	Vium164g00045	606	Pfam	IQ calmodulin-binding motif	145	162	IPR000048	GO:0005515
	Vium164g00045	606	Pfam	IQ calmodulin-binding motif	123	142	IPR000048	GO:0005515
	Vium164g00045	606	Pfam	Protein of unknown function (DUF4005)	504	584	IPR025064	-
	Vium164g00045	606	SMART	iq_5	120	142	IPR000048	GO:0005515
	Vium164g00045	606	SMART	iq_5	143	164	IPR000048	GO:0005515
	Vium164g00045	606	ProSiteProfiles	IQ motif profile.	145	172	IPR000048	GO:0005515
	Vium164g00045	606	ProSiteProfiles	IQ motif profile.	121	149	IPR000048	GO:0005515
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vium164g00045	606	MobiDBLite	consensus disorder prediction	505	521	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium164g00045	Vium-Chr164	401513	409836	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium164g00045	22	606	IQD Protein Family	AT1G74690	43.648	1.30e-122	373

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium164g00045	-		-	gmx:100794636	959.518